| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116691023
Identifier: 116691023
GI number: 116691023
Start: 3317075
End: 3317836
Strand: Reverse
Name: 116691023
Synonym: Bcen2424_3005
Alternate gene names: NA
Gene position: 3317836-3317075 (Counterclockwise)
Preceding gene: 116691024
Following gene: 116691022
Centisome position: 95.23
GC content: 66.54
Gene sequence:
>762_bases ATGACTTGCCACGATCGCCGAATCGGCGATGAACGCGTGCGCGTGCCCCGCGCAGTGCCCTCTTTTCCAGCAAGGAGACC CGCAGTGAACATTCAGACACGACGCACCGTCCTCGTGGCGGCGGCGGTCGTCGCAGCGCTGTCCGGCTGCGCGACCGAAT CGTCGCGCACGCTCGACGTGCCGGCCGTCAGCAGCGCGCAGAAGCCGTACGCGGGCAAGCCCGTCGCGATCGCCGTCGGC AAGTTCGACAACCGCTCGAGCTACATGCGCGGCATCTTCTCCGACGGCATCGACCGCCTCGGCGGACAGGCGAAGACGAT CCTCGTCACGCGCCTGCAGCAGAGCCGCCGCTTCAACGTGCTCGATCGCGAGAACCTCGACGAGATCAGGCAGGAAGCGG GCTTCATGAAGAAGGCGCAGGCCGTGAAGGGCGCGAACTACGTGGTGACCGGCGACGTGACCGAGTTCGGCCGCAAGGAC GTCGGCGATCATCAGCTGTTCGGCATTCTCGGCCGCGGCAAGACGCAGGTCGCGTACGCGAAGGTCAACCTGAACATCGT CGACACGACGACGTCGGAAGTCGTCGCATCGAGCCAGGGCGCGGGCGAGTTCAGCCTGTCGAACCGCGAGGTGATCGGCT TCGGCGGCACGGCCGGCTACGACTCGACGCTCAACGGCAAGGTGCTGGACCTCGCGATCCAGGAAGCCGTGAACCATCTC GTCGACCAGGTCGACGCCGGCGTGCTGAGGGCCGCGCAATAA
Upstream 100 bases:
>100_bases AGTAATCAGAATAACGGAATCATCCGTGCGCGCGATGCCAGCGCGTATCGCATTATCGATCCGCTTTTCGCCGTAACGCA TCCGTTGCGCGCGTTCCTCC
Downstream 100 bases:
>100_bases GTGCCGCGCGCGATACGGCGCGCACGAATCATTTCACCAACCAGAAGAGACAAGACCATGAAACGGGGAATCTGGCTGCC GGCGACTGCGGCCGCCTTGC
Product: curli production assembly/transport component CsgG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MTCHDRRIGDERVRVPRAVPSFPARRPAVNIQTRRTVLVAAAVVAALSGCATESSRTLDVPAVSSAQKPYAGKPVAIAVG KFDNRSSYMRGIFSDGIDRLGGQAKTILVTRLQQSRRFNVLDRENLDEIRQEAGFMKKAQAVKGANYVVTGDVTEFGRKD VGDHQLFGILGRGKTQVAYAKVNLNIVDTTTSEVVASSQGAGEFSLSNREVIGFGGTAGYDSTLNGKVLDLAIQEAVNHL VDQVDAGVLRAAQ
Sequences:
>Translated_253_residues MTCHDRRIGDERVRVPRAVPSFPARRPAVNIQTRRTVLVAAAVVAALSGCATESSRTLDVPAVSSAQKPYAGKPVAIAVG KFDNRSSYMRGIFSDGIDRLGGQAKTILVTRLQQSRRFNVLDRENLDEIRQEAGFMKKAQAVKGANYVVTGDVTEFGRKD VGDHQLFGILGRGKTQVAYAKVNLNIVDTTTSEVVASSQGAGEFSLSNREVIGFGGTAGYDSTLNGKVLDLAIQEAVNHL VDQVDAGVLRAAQ >Mature_252_residues TCHDRRIGDERVRVPRAVPSFPARRPAVNIQTRRTVLVAAAVVAALSGCATESSRTLDVPAVSSAQKPYAGKPVAIAVGK FDNRSSYMRGIFSDGIDRLGGQAKTILVTRLQQSRRFNVLDRENLDEIRQEAGFMKKAQAVKGANYVVTGDVTEFGRKDV GDHQLFGILGRGKTQVAYAKVNLNIVDTTTSEVVASSQGAGEFSLSNREVIGFGGTAGYDSTLNGKVLDLAIQEAVNHLV DQVDAGVLRAAQ
Specific function: Unknown
COG id: COG1462
COG function: function code M; Uncharacterized protein involved in formation of curli polymers
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005534 - InterPro: IPR007195 [H]
Pfam domain/function: PF03783 CsgG [H]
EC number: NA
Molecular weight: Translated: 27118; Mature: 26987
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCHDRRIGDERVRVPRAVPSFPARRPAVNIQTRRTVLVAAAVVAALSGCATESSRTLDV CCCCCCCCCHHHHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCEECC PAVSSAQKPYAGKPVAIAVGKFDNRSSYMRGIFSDGIDRLGGQAKTILVTRLQQSRRFNV CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC LDRENLDEIRQEAGFMKKAQAVKGANYVVTGDVTEFGRKDVGDHQLFGILGRGKTQVAYA CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCEEEEECCCCCEEEEE KVNLNIVDTTTSEVVASSQGAGEFSLSNREVIGFGGTAGYDSTLNGKVLDLAIQEAVNHL EEEEEEEECCHHHHHHCCCCCCCEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH VDQVDAGVLRAAQ HHHHHHHHHHCCC >Mature Secondary Structure TCHDRRIGDERVRVPRAVPSFPARRPAVNIQTRRTVLVAAAVVAALSGCATESSRTLDV CCCCCCCCHHHHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCEECC PAVSSAQKPYAGKPVAIAVGKFDNRSSYMRGIFSDGIDRLGGQAKTILVTRLQQSRRFNV CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC LDRENLDEIRQEAGFMKKAQAVKGANYVVTGDVTEFGRKDVGDHQLFGILGRGKTQVAYA CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCEEEEECCCCCEEEEE KVNLNIVDTTTSEVVASSQGAGEFSLSNREVIGFGGTAGYDSTLNGKVLDLAIQEAVNHL EEEEEEEECCHHHHHHCCCCCCCEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH VDQVDAGVLRAAQ HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]