| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is ctaC [H]
Identifier: 116690867
GI number: 116690867
Start: 3147203
End: 3148801
Strand: Reverse
Name: ctaC [H]
Synonym: Bcen2424_2847
Alternate gene names: 116690867
Gene position: 3148801-3147203 (Counterclockwise)
Preceding gene: 116690868
Following gene: 116690866
Centisome position: 90.38
GC content: 64.92
Gene sequence:
>1599_bases ATGGAAATTTTGGGTAAGGATGCTATGAAAACAATCAAGCGAGCCCTCACGGGCGTGCTGGCATGCAGCGGATTGCTCTT TGCCGGTGCGGCCCTGGCGGTCGGTGATAGCCCGGGCGGCCCCCGTGTCAACGAGATCAACTTTCAGCCGCCTGTCACGA AGATCGCCGAGGAGCTCTACGATCTCCACACGATGATGCTGATCCTGTGTACGGTGATCTTCGTCGGCGTGTTCGGCGTG ATGTTCTATTCGATCTTCGCGCACCGCAAATCCAAGGGCCACAAGGCCGCCAATTTCCATGAAAGCACGACCGTCGAGAT CATCTGGACGATCGTGCCGTTCGTCATCGTCGTGCTGATGGCGCTGCCGGCGACGAAGGCCGTCGTCGCGATGAAGGACA CGACGAACGCCGATCTCACGATCAAGGTCACCGGCTACCAGTGGAAGTGGGGCTACGACTACGTGAAGGGCCCGGGCGAG GGCATCGGCTTCCTGTCGACGCTGACCACCCCGCGCGACGAAGTGATGGGCAAGAAGCCGATCACCGACACCTATCTGCA GGAAGTCGACAACCCGCTCGTCGTGCCGGTCAACAAGAAGATCCGCATCATCACGACCGCGAACGACGTCGTTCACTCGT GGTACGTGCCCGCGTTCGGCGTGAAGCAGGATGCGATTCCCGGCTTCGTGCGCGACACGTGGTTCAAGGCCGACAAGGTC GGCACGTTCCGCGGTTTCTGTACCGAGCTGTGCGGCAAGGAGCATGCGTACATGCCGGTCGTCGTCGAAGTCCTGTCGGA CGACGACTACGCGAAGTGGGTCAGCGCGCAGAAGGCGAAGCTGGCCAGCGCGGCGGTCGACCCGAACAAGGTCTACACGA TGGCCGAACTCGTCGCGCACGGCGAGGAAGTCTACAAGGCGAACTGCGCGGCCTGCCACCAGGTGAACGGCAAGGGCCTC GGCGCGTTCCCGGCGATGGACGGCAGCCCGATCGTGAACGGCCCGATCGCCGCGCACGTCGAGCGCGTGCTGCACGGCAA GGGCGCGATGCCGTCGTGGGCGTCGCTGTCGGACCTCGACATCGCTTCGGTCGTCACGTACGAACGCAACTCGTGGGGCA ACCACAAGAACGACCTGCTGCAGCCGAAGCAAGTGGCTGACGCACGCAACGGCAAGCTGCCGGAAGACACGGCGGGCGCG GCAACGGCAGCGGCCCCGGCAGAAGCGGCTTCGGCGCCGGCGCAAGCCGCGTCGGGTGCCGAACAGCCGGCGGCAGCGGC ATCGGCCGCGCTGTCGACGATCTACTTCGAGACGGGCAAGAGCGTGCTGCCGGCCGACGCGAAGGCGGCGATCGCCGCCG CGGCCGACTATGCGAAGGCACATCCGGACGCGAAGCTCGCGCTGTCGGGCTTCACCGACAAGACGGGCTCGGCCGACGCG AACGCCGAACTGGCGAAGCATCGCGCGCAGGCCGTGCGCGATGCGCTGAAGGCAGCAGGCGTGGCGGAAGACCACATTAT TCTCAAAAAGCCGGAAACGATCACGGGCGGGGCTGACGCGAAGGAAGCCCGGCGTGTCGAGATCGGCCCGGCGGCTTGA
Upstream 100 bases:
>100_bases AGTTCGCCGACGAGCTGCGCGTGTCGCTCAGGCGCTGCGGCTGACGAGGCGCGGTCATTGGCCGGACGAGGCTGGTGGCT TGCGACGGGGGAGGGTTTGA
Downstream 100 bases:
>100_bases CGTGTCGCTGAGTTAGTCGACGTATTCGCATTAGGAGATTCTCATGTCTAGCATCGGGCACGACGTAGCCGCGGACCACG CGCACGACGACCACGCGCAC
Product: cytochrome c oxidase, subunit II
Products: NA
Alternate protein names: Cytochrome aa3 subunit 2; Cytochrome c oxidase polypeptide II; Oxidase aa(3) subunit 2 [H]
Number of amino acids: Translated: 532; Mature: 532
Protein sequence:
>532_residues MEILGKDAMKTIKRALTGVLACSGLLFAGAALAVGDSPGGPRVNEINFQPPVTKIAEELYDLHTMMLILCTVIFVGVFGV MFYSIFAHRKSKGHKAANFHESTTVEIIWTIVPFVIVVLMALPATKAVVAMKDTTNADLTIKVTGYQWKWGYDYVKGPGE GIGFLSTLTTPRDEVMGKKPITDTYLQEVDNPLVVPVNKKIRIITTANDVVHSWYVPAFGVKQDAIPGFVRDTWFKADKV GTFRGFCTELCGKEHAYMPVVVEVLSDDDYAKWVSAQKAKLASAAVDPNKVYTMAELVAHGEEVYKANCAACHQVNGKGL GAFPAMDGSPIVNGPIAAHVERVLHGKGAMPSWASLSDLDIASVVTYERNSWGNHKNDLLQPKQVADARNGKLPEDTAGA ATAAAPAEAASAPAQAASGAEQPAAAASAALSTIYFETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKTGSADA NAELAKHRAQAVRDALKAAGVAEDHIILKKPETITGGADAKEARRVEIGPAA
Sequences:
>Translated_532_residues MEILGKDAMKTIKRALTGVLACSGLLFAGAALAVGDSPGGPRVNEINFQPPVTKIAEELYDLHTMMLILCTVIFVGVFGV MFYSIFAHRKSKGHKAANFHESTTVEIIWTIVPFVIVVLMALPATKAVVAMKDTTNADLTIKVTGYQWKWGYDYVKGPGE GIGFLSTLTTPRDEVMGKKPITDTYLQEVDNPLVVPVNKKIRIITTANDVVHSWYVPAFGVKQDAIPGFVRDTWFKADKV GTFRGFCTELCGKEHAYMPVVVEVLSDDDYAKWVSAQKAKLASAAVDPNKVYTMAELVAHGEEVYKANCAACHQVNGKGL GAFPAMDGSPIVNGPIAAHVERVLHGKGAMPSWASLSDLDIASVVTYERNSWGNHKNDLLQPKQVADARNGKLPEDTAGA ATAAAPAEAASAPAQAASGAEQPAAAASAALSTIYFETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKTGSADA NAELAKHRAQAVRDALKAAGVAEDHIILKKPETITGGADAKEARRVEIGPAA >Mature_532_residues MEILGKDAMKTIKRALTGVLACSGLLFAGAALAVGDSPGGPRVNEINFQPPVTKIAEELYDLHTMMLILCTVIFVGVFGV MFYSIFAHRKSKGHKAANFHESTTVEIIWTIVPFVIVVLMALPATKAVVAMKDTTNADLTIKVTGYQWKWGYDYVKGPGE GIGFLSTLTTPRDEVMGKKPITDTYLQEVDNPLVVPVNKKIRIITTANDVVHSWYVPAFGVKQDAIPGFVRDTWFKADKV GTFRGFCTELCGKEHAYMPVVVEVLSDDDYAKWVSAQKAKLASAAVDPNKVYTMAELVAHGEEVYKANCAACHQVNGKGL GAFPAMDGSPIVNGPIAAHVERVLHGKGAMPSWASLSDLDIASVVTYERNSWGNHKNDLLQPKQVADARNGKLPEDTAGA ATAAAPAEAASAPAQAASGAEQPAAAASAALSTIYFETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKTGSADA NAELAKHRAQAVRDALKAAGVAEDHIILKKPETITGGADAKEARRVEIGPAA
Specific function: Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) [H]
COG id: COG1622
COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]
Homologues:
Organism=Homo sapiens, GI251831110, Length=221, Percent_Identity=34.3891402714932, Blast_Score=136, Evalue=6e-32, Organism=Saccharomyces cerevisiae, GI6226540, Length=235, Percent_Identity=32.7659574468085, Blast_Score=130, Evalue=4e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001505 - InterPro: IPR008972 - InterPro: IPR014222 - InterPro: IPR015964 - InterPro: IPR002429 - InterPro: IPR011759 [H]
Pfam domain/function: PF00116 COX2; PF02790 COX2_TM [H]
EC number: =1.9.3.1 [H]
Molecular weight: Translated: 56308; Mature: 56308
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: PS00078 COX2 ; PS50999 COX2_TM ; PS50857 COX2_CUA ; PS51007 CYTC ; PS51123 OMPA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEILGKDAMKTIKRALTGVLACSGLLFAGAALAVGDSPGGPRVNEINFQPPVTKIAEELY CCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCCCCCCCCCCCCHHHHHHHHH DLHTMMLILCTVIFVGVFGVMFYSIFAHRKSKGHKAANFHESTTVEIIWTIVPFVIVVLM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ALPATKAVVAMKDTTNADLTIKVTGYQWKWGYDYVKGPGEGIGFLSTLTTPRDEVMGKKP HCCCCCEEEEEECCCCCCEEEEEECEEEECCCCCCCCCCCCCCHHHHCCCCHHHHCCCCC ITDTYLQEVDNPLVVPVNKKIRIITTANDVVHSWYVPAFGVKQDAIPGFVRDTWFKADKV CCHHHHHHCCCCEEEECCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCC GTFRGFCTELCGKEHAYMPVVVEVLSDDDYAKWVSAQKAKLASAAVDPNKVYTMAELVAH CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC GEEVYKANCAACHQVNGKGLGAFPAMDGSPIVNGPIAAHVERVLHGKGAMPSWASLSDLD CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC IASVVTYERNSWGNHKNDLLQPKQVADARNGKLPEDTAGAATAAAPAEAASAPAQAASGA HHHHEEECCCCCCCCCHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHCCC EQPAAAASAALSTIYFETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKTGSADA CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC NAELAKHRAQAVRDALKAAGVAEDHIILKKPETITGGADAKEARRVEIGPAA HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCC >Mature Secondary Structure MEILGKDAMKTIKRALTGVLACSGLLFAGAALAVGDSPGGPRVNEINFQPPVTKIAEELY CCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCCCCCCCCCCCCHHHHHHHHH DLHTMMLILCTVIFVGVFGVMFYSIFAHRKSKGHKAANFHESTTVEIIWTIVPFVIVVLM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ALPATKAVVAMKDTTNADLTIKVTGYQWKWGYDYVKGPGEGIGFLSTLTTPRDEVMGKKP HCCCCCEEEEEECCCCCCEEEEEECEEEECCCCCCCCCCCCCCHHHHCCCCHHHHCCCCC ITDTYLQEVDNPLVVPVNKKIRIITTANDVVHSWYVPAFGVKQDAIPGFVRDTWFKADKV CCHHHHHHCCCCEEEECCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCC GTFRGFCTELCGKEHAYMPVVVEVLSDDDYAKWVSAQKAKLASAAVDPNKVYTMAELVAH CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC GEEVYKANCAACHQVNGKGLGAFPAMDGSPIVNGPIAAHVERVLHGKGAMPSWASLSDLD CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC IASVVTYERNSWGNHKNDLLQPKQVADARNGKLPEDTAGAATAAAPAEAASAPAQAASGA HHHHEEECCCCCCCCCHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHCCC EQPAAAASAALSTIYFETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKTGSADA CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC NAELAKHRAQAVRDALKAAGVAEDHIILKKPETITGGADAKEARRVEIGPAA HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1648008 [H]