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The map label for this gene is 116690856

Identifier: 116690856

GI number: 116690856

Start: 3138887

End: 3139504

Strand: Reverse

Name: 116690856

Synonym: Bcen2424_2836

Alternate gene names: NA

Gene position: 3139504-3138887 (Counterclockwise)

Preceding gene: 116690857

Following gene: 116690854

Centisome position: 90.11

GC content: 66.34

Gene sequence:

>618_bases
ATGCTTCCATCACGGTTCGGGCGCCGCGCGCGCCAAGGCTGGATGCTCGCGTGCGCATTCACGGCAGCGCTGCTGCTCGC
CGGATGCGACAACGCGCCGAAATTCCAGAATCTCGACATCACCGGCAACACGCAGTTCGGCTCCGATTTCTCGCTGCCCG
ATACGACCGGCAAGGTGCGCACGCTCGCCGACTTCAAGGGCCGTGCCGTCGTGATGTTCTTCGGCTATACGCATTGCCCG
GACGTGTGCCCGACCACGATGGCCGAATTGTCCGAAGCGCTGAAGCAGCTCGGCCCCGACGCCGCGAAGCGCGTGCAGGT
GCTGTTCGTCACCGTCGATCCGGAACGCGACACGCCGGCGCTGCTCGGCCAGTACGTGCCCGCGTTCGATCCGTCGTTCA
TCGGCCTGCGGCCGGCCGACGAAGCGGCGCTGAAGAAGGTCACGAAGGATTTCCGCGTGTACTACGCGAAGGTGCCCGGC
AAGACGCCCGGCAGTTACACGATGGATCACACGGCCGCGAGCTACGTGTTCGACCGCGACGGCAAGCTGCGCCTGTTCGT
GCGCGATGGCCAGGGCCCGGCCCCGTGGGTCCACGACCTGAAGCTGCTGGTCGACTGA

Upstream 100 bases:

>100_bases
CCGCTATTCGATCGTCTATCTGTCGCTGCTGTTTGCCGCGCTGCTCGTCGATCACTATGCACGCCCGCTGCTCGGCGTGT
AACCGCACGGTTTGAACGCA

Downstream 100 bases:

>100_bases
CCGGCAACCGCCGGGCGCCCGGCCCGGCGGTTCGCGTGACGGCCGTTTTCGCGCCGTCGCGTTTTCCCGCTCTCGTTGTC
GTGCGCATGCGCTGCCCGCC

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MLPSRFGRRARQGWMLACAFTAALLLAGCDNAPKFQNLDITGNTQFGSDFSLPDTTGKVRTLADFKGRAVVMFFGYTHCP
DVCPTTMAELSEALKQLGPDAAKRVQVLFVTVDPERDTPALLGQYVPAFDPSFIGLRPADEAALKKVTKDFRVYYAKVPG
KTPGSYTMDHTAASYVFDRDGKLRLFVRDGQGPAPWVHDLKLLVD

Sequences:

>Translated_205_residues
MLPSRFGRRARQGWMLACAFTAALLLAGCDNAPKFQNLDITGNTQFGSDFSLPDTTGKVRTLADFKGRAVVMFFGYTHCP
DVCPTTMAELSEALKQLGPDAAKRVQVLFVTVDPERDTPALLGQYVPAFDPSFIGLRPADEAALKKVTKDFRVYYAKVPG
KTPGSYTMDHTAASYVFDRDGKLRLFVRDGQGPAPWVHDLKLLVD
>Mature_205_residues
MLPSRFGRRARQGWMLACAFTAALLLAGCDNAPKFQNLDITGNTQFGSDFSLPDTTGKVRTLADFKGRAVVMFFGYTHCP
DVCPTTMAELSEALKQLGPDAAKRVQVLFVTVDPERDTPALLGQYVPAFDPSFIGLRPADEAALKKVTKDFRVYYAKVPG
KTPGSYTMDHTAASYVFDRDGKLRLFVRDGQGPAPWVHDLKLLVD

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=134, Percent_Identity=38.8059701492537, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI281182722, Length=134, Percent_Identity=38.8059701492537, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI281182716, Length=134, Percent_Identity=38.8059701492537, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI153791313, Length=134, Percent_Identity=38.8059701492537, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI4759068, Length=147, Percent_Identity=34.0136054421769, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17531419, Length=146, Percent_Identity=32.8767123287671, Blast_Score=91, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6319498, Length=143, Percent_Identity=33.5664335664336, Blast_Score=99, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6319511, Length=144, Percent_Identity=35.4166666666667, Blast_Score=97, Evalue=2e-21,
Organism=Drosophila melanogaster, GI19920710, Length=143, Percent_Identity=35.6643356643357, Blast_Score=109, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22554; Mature: 22554

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPSRFGRRARQGWMLACAFTAALLLAGCDNAPKFQNLDITGNTQFGSDFSLPDTTGKVR
CCCHHHHHHHHCCEEHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEE
TLADFKGRAVVMFFGYTHCPDVCPTTMAELSEALKQLGPDAAKRVQVLFVTVDPERDTPA
EEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHH
LLGQYVPAFDPSFIGLRPADEAALKKVTKDFRVYYAKVPGKTPGSYTMDHTAASYVFDRD
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCEECCHHEEEEECCC
GKLRLFVRDGQGPAPWVHDLKLLVD
CCEEEEEECCCCCCCHHHHHEEECC
>Mature Secondary Structure
MLPSRFGRRARQGWMLACAFTAALLLAGCDNAPKFQNLDITGNTQFGSDFSLPDTTGKVR
CCCHHHHHHHHCCEEHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEE
TLADFKGRAVVMFFGYTHCPDVCPTTMAELSEALKQLGPDAAKRVQVLFVTVDPERDTPA
EEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHH
LLGQYVPAFDPSFIGLRPADEAALKKVTKDFRVYYAKVPGKTPGSYTMDHTAASYVFDRD
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCEECCHHEEEEECCC
GKLRLFVRDGQGPAPWVHDLKLLVD
CCEEEEEECCCCCCCHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA