| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690802
Identifier: 116690802
GI number: 116690802
Start: 3079479
End: 3080345
Strand: Reverse
Name: 116690802
Synonym: Bcen2424_2782
Alternate gene names: NA
Gene position: 3080345-3079479 (Counterclockwise)
Preceding gene: 116690803
Following gene: 116690801
Centisome position: 88.42
GC content: 71.05
Gene sequence:
>867_bases ATGACGTTTCCGTGCATCGCGGCCGCGCGCCGCTTCGATCCGGCCGCGCACCTGCGTTTCGAGATCGCCGGCCAGGCGGT CGGCTGGGTGCGCCGCCAGGACGTCGCGAAGCTCGTGCGCTGGCCCGACGTGTTCGAGCTGACCGGCGAGCGCGTCGTGC TGTCGGCGCGCTACGATTCGGTCGATGCGCGCAGCATGGCGTTGGCCAGCGCGATCGGCGCGCTCGCGGCCGAGGGCGCG ATTCCCGGCTGGCGCGACGAGATCTATGCGATCCGCAACCGCTTCGACGATCCGCCGCTCGCGTACATCGAGCGCGCCGC GTCGCGCTTCTTCGGCACACAGACCTATGCGGTGCACGTGAACGGCATCGTAGAATATGCGGTTACGCCGGGCGAGCCGC CCGTCGCGGCCGCGCCGAAGATGTGGCTCGGCCGCCGCAGCGCGACCAAGGCGACCGACCCCGGCATGCTCGACAACGTC GTCGCGGGCGGGGTCGGCTGGGGGCTGGGCGTTCACGAGACGCTCGCGAAGGAATGCTGGGAAGAAGCCGGCATTCCGGC CGACCTGGCGGCGCGCGCGATCGCGGGCCGCACGGTGCAGGTACTGAACTCGCTGCCGGAAGGCACGCAGTCCGAATTGA TCTTCGTGTACGACCTGCCGCTGCCGCACGATTTCGCGCCGCGCAACCAGGATGGCGAAGTGGCCGAACACCTGCTGGCC GGCGTGCCCGAGGTGATCGGCTGGCTGCGCGAAGGCCGCGCGACGATGGATGCGAGCCTCGCGACGCTCGACACGCTGCT GCGCCACCGCTGGATCGCGGCGGCCGACGCGGCCGGCATCGACGCGCTGTTCGTGCCGGCTGCATGA
Upstream 100 bases:
>100_bases GGCTGAAGCGGCGCCCGAAGGCCGGCGTGTGGCTCGACCGGATCGCGGGCGCCACGTTCATCGCGATCGGCATTCGCGTC GCACTGAAGGATTGATGACG
Downstream 100 bases:
>100_bases CGTGCACCGCGACGCGCGCCGCGCGGCGCGAACGGGCAATTTGACGAATACGGAAACAATGGGAGTAGCGGTCATGCCGA CCGATTACAGCTTTATCTTG
Product: NUDIX hydrolase
Products: NA
Alternate protein names: Thiamin Pyrophosphokinase; NUDIX Domain-Containing Protein; Nucleoside Diphosphate; Thiamine Pyrophosphokinase; Nucleoside Diphosphate Hydrolase Protein; NTP Pyrophosphohydrolase; MutT/Nudix Family Protein; NUDIX Domain Family Protein; Nudix Family Protein; NTP Pyrophosphohydrolase Including Oxidative Damage Repair; Nudix Hydrolase; NUDIX Domain-Containing; Hydrolase NUDIX Family
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MTFPCIAAARRFDPAAHLRFEIAGQAVGWVRRQDVAKLVRWPDVFELTGERVVLSARYDSVDARSMALASAIGALAAEGA IPGWRDEIYAIRNRFDDPPLAYIERAASRFFGTQTYAVHVNGIVEYAVTPGEPPVAAAPKMWLGRRSATKATDPGMLDNV VAGGVGWGLGVHETLAKECWEEAGIPADLAARAIAGRTVQVLNSLPEGTQSELIFVYDLPLPHDFAPRNQDGEVAEHLLA GVPEVIGWLREGRATMDASLATLDTLLRHRWIAAADAAGIDALFVPAA
Sequences:
>Translated_288_residues MTFPCIAAARRFDPAAHLRFEIAGQAVGWVRRQDVAKLVRWPDVFELTGERVVLSARYDSVDARSMALASAIGALAAEGA IPGWRDEIYAIRNRFDDPPLAYIERAASRFFGTQTYAVHVNGIVEYAVTPGEPPVAAAPKMWLGRRSATKATDPGMLDNV VAGGVGWGLGVHETLAKECWEEAGIPADLAARAIAGRTVQVLNSLPEGTQSELIFVYDLPLPHDFAPRNQDGEVAEHLLA GVPEVIGWLREGRATMDASLATLDTLLRHRWIAAADAAGIDALFVPAA >Mature_287_residues TFPCIAAARRFDPAAHLRFEIAGQAVGWVRRQDVAKLVRWPDVFELTGERVVLSARYDSVDARSMALASAIGALAAEGAI PGWRDEIYAIRNRFDDPPLAYIERAASRFFGTQTYAVHVNGIVEYAVTPGEPPVAAAPKMWLGRRSATKATDPGMLDNVV AGGVGWGLGVHETLAKECWEEAGIPADLAARAIAGRTVQVLNSLPEGTQSELIFVYDLPLPHDFAPRNQDGEVAEHLLAG VPEVIGWLREGRATMDASLATLDTLLRHRWIAAADAAGIDALFVPAA
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6322602, Length=273, Percent_Identity=29.3040293040293, Blast_Score=122, Evalue=7e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31046; Mature: 30914
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFPCIAAARRFDPAAHLRFEIAGQAVGWVRRQDVAKLVRWPDVFELTGERVVLSARYDS CCCCHHHHHHHCCCHHHEEEEECCHHHHHHHHHHHHHHHCCCCHHEECCCEEEEEECCCC VDARSMALASAIGALAAEGAIPGWRDEIYAIRNRFDDPPLAYIERAASRFFGTQTYAVHV CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE NGIVEYAVTPGEPPVAAAPKMWLGRRSATKATDPGMLDNVVAGGVGWGLGVHETLAKECW CCEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHH EEAGIPADLAARAIAGRTVQVLNSLPEGTQSELIFVYDLPLPHDFAPRNQDGEVAEHLLA HHCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH GVPEVIGWLREGRATMDASLATLDTLLRHRWIAAADAAGIDALFVPAA CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC >Mature Secondary Structure TFPCIAAARRFDPAAHLRFEIAGQAVGWVRRQDVAKLVRWPDVFELTGERVVLSARYDS CCCHHHHHHHCCCHHHEEEEECCHHHHHHHHHHHHHHHCCCCHHEECCCEEEEEECCCC VDARSMALASAIGALAAEGAIPGWRDEIYAIRNRFDDPPLAYIERAASRFFGTQTYAVHV CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE NGIVEYAVTPGEPPVAAAPKMWLGRRSATKATDPGMLDNVVAGGVGWGLGVHETLAKECW CCEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHH EEAGIPADLAARAIAGRTVQVLNSLPEGTQSELIFVYDLPLPHDFAPRNQDGEVAEHLLA HHCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH GVPEVIGWLREGRATMDASLATLDTLLRHRWIAAADAAGIDALFVPAA CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA