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The map label for this gene is nodB [H]

Identifier: 116690785

GI number: 116690785

Start: 3062177

End: 3063061

Strand: Direct

Name: nodB [H]

Synonym: Bcen2424_2765

Alternate gene names: 116690785

Gene position: 3062177-3063061 (Clockwise)

Preceding gene: 116690784

Following gene: 116690786

Centisome position: 87.9

GC content: 74.24

Gene sequence:

>885_bases
ATGAACGTGCCGCCTTGCGTTCCACCGCACGACGCCGGCGACGCGCGCCGCTGGAAGCCGACGCCGCTGATCGCCGGCGC
CGCCGCGCTGCATGCGGGCGCGGCCGCCGCGGTGATCGCGCAACCGGCCACGTGGCCGTGGGCCGTCGGCGGCGTGGTCG
CGTCGCATCTCGCGCTGACCGCGGCCGGGTTGTGGCCGCGCAGCACGCTGCTCGGCCCGAACTGGACGCGCCTGCCGGCC
GGCGCGGGCCGCCGCATCGCATTGACGATCGACGACGGTCCGGACCCGGACGTGACGCCGCGCGTGCTGGACCTGCTCGA
CCGTTACGACGCACGCGCGACGTTCTTCTGCATCGGCGATCTCGCGCGCCGCCACCCACTGTGGATCGAGGCGATCGTCG
CGCGCGGCCATGCGGTCGAGAACCACAGCCAGCGGCACCGCCATACGTTCTCGCTGTCGGGGCCGGCCGCACTGCGGCGC
GAGATCGCGGCCGCGCAGCAGACGCTGACCGACATCGCCGGCACGCGCCCGCTGTTCTTCCGCGCGCCGGCCGGCCTGCG
CAATCCGTTTCTCGAACCGGTGCTGTGCGAATTCGGGCTGCAACTCGCGAGCTGGACGCGGCGCGGCTTCGACACGCGTG
CGCGCGACGCCGCGACCGTCACGCGCCGCCTGCTGCATGGGCTCGATGCGCGCGACATCCTGCTCGTGCACGACGGTCAC
GCGGCGCGCGACACGCGCGGCGAACCGGTCGTGCTCGACGTGCTGCCCGCGGTGCTGCGTGCGGCCGCCGACGCGCAGTT
GCCCTGGACCACCCTGCGCGCGGCGCTGGCACCCGAACCGCCCGGCCAGCTGGGCGTTCCGGCACCCCCGTTTGATAAAA
TCTGA

Upstream 100 bases:

>100_bases
TGCTCGCGCTCGCGTTCGCGGCGATTCTCGCGCCGCGCGCCGCAGAGACGGCGGCGGCGGCGGCGGCGGCGGCCGGCAAT
CGTGAACGAGGAGGCCGCGC

Downstream 100 bases:

>100_bases
CCTCGAACGGCGCGCGTGCCAGCCCTGCTGCGGCGCCCGTTCCGGCCACCGGATGCGACCCTCGTGAACCCTCTCCTGCT
CTCGCACTTCACCGCCACCA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MNVPPCVPPHDAGDARRWKPTPLIAGAAALHAGAAAAVIAQPATWPWAVGGVVASHLALTAAGLWPRSTLLGPNWTRLPA
GAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGDLARRHPLWIEAIVARGHAVENHSQRHRHTFSLSGPAALRR
EIAAAQQTLTDIAGTRPLFFRAPAGLRNPFLEPVLCEFGLQLASWTRRGFDTRARDAATVTRRLLHGLDARDILLVHDGH
AARDTRGEPVVLDVLPAVLRAAADAQLPWTTLRAALAPEPPGQLGVPAPPFDKI

Sequences:

>Translated_294_residues
MNVPPCVPPHDAGDARRWKPTPLIAGAAALHAGAAAAVIAQPATWPWAVGGVVASHLALTAAGLWPRSTLLGPNWTRLPA
GAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGDLARRHPLWIEAIVARGHAVENHSQRHRHTFSLSGPAALRR
EIAAAQQTLTDIAGTRPLFFRAPAGLRNPFLEPVLCEFGLQLASWTRRGFDTRARDAATVTRRLLHGLDARDILLVHDGH
AARDTRGEPVVLDVLPAVLRAAADAQLPWTTLRAALAPEPPGQLGVPAPPFDKI
>Mature_294_residues
MNVPPCVPPHDAGDARRWKPTPLIAGAAALHAGAAAAVIAQPATWPWAVGGVVASHLALTAAGLWPRSTLLGPNWTRLPA
GAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGDLARRHPLWIEAIVARGHAVENHSQRHRHTFSLSGPAALRR
EIAAAQQTLTDIAGTRPLFFRAPAGLRNPFLEPVLCEFGLQLASWTRRGFDTRARDAATVTRRLLHGLDARDILLVHDGH
AARDTRGEPVVLDVLPAVLRAAADAQLPWTTLRAALAPEPPGQLGVPAPPFDKI

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 31576; Mature: 31576

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVPPCVPPHDAGDARRWKPTPLIAGAAALHAGAAAAVIAQPATWPWAVGGVVASHLALT
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHH
AAGLWPRSTLLGPNWTRLPAGAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGD
HHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHH
LARRHPLWIEAIVARGHAVENHSQRHRHTFSLSGPAALRREIAAAQQTLTDIAGTRPLFF
HHHCCCHHHHHHHHHCCHHHCCHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
RAPAGLRNPFLEPVLCEFGLQLASWTRRGFDTRARDAATVTRRLLHGLDARDILLVHDGH
ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
AARDTRGEPVVLDVLPAVLRAAADAQLPWTTLRAALAPEPPGQLGVPAPPFDKI
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNVPPCVPPHDAGDARRWKPTPLIAGAAALHAGAAAAVIAQPATWPWAVGGVVASHLALT
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHH
AAGLWPRSTLLGPNWTRLPAGAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGD
HHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHH
LARRHPLWIEAIVARGHAVENHSQRHRHTFSLSGPAALRREIAAAQQTLTDIAGTRPLFF
HHHCCCHHHHHHHHHCCHHHCCHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
RAPAGLRNPFLEPVLCEFGLQLASWTRRGFDTRARDAATVTRRLLHGLDARDILLVHDGH
ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
AARDTRGEPVVLDVLPAVLRAAADAQLPWTTLRAALAPEPPGQLGVPAPPFDKI
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]