| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690777
Identifier: 116690777
GI number: 116690777
Start: 3052629
End: 3053621
Strand: Reverse
Name: 116690777
Synonym: Bcen2424_2757
Alternate gene names: NA
Gene position: 3053621-3052629 (Counterclockwise)
Preceding gene: 116690778
Following gene: 116690776
Centisome position: 87.65
GC content: 71.9
Gene sequence:
>993_bases ATGCTGACCGATGCCGCGCCCGGCCTGCCGGTCGCGCCGGTGCAGATGGCGCTGCTCGGCGCCGAAGTCGCACCGGGCGA GGCCGTCTGCGAACTGTGGCAGTGCGATGCGCACGACCTGCGCGGCGAACGGCGCGGTCCACTGCATTACCGCTACAGTG AAGCGGCGGGGCTCGTGTTCGGCAGCCTCGTCGTGCACGAGACGGACGCGGCTTACGACGCGTCGCGCGACGGCGGCACG CCGCTCGAACGCGCGACGTTCGATGCGTACCGCGCGCTGTTCGACCTGCTCGATACGCTCGGCATGCCGCATCCGCTGCG GATCTGGAACACCGTGCCGGCGATCAATGCGGTGCAGTTCGGCGTCGAGCGCTATCGTCAATTCAATATCGGCCGTCAGC GCGCATTCGACGCGTGCCGCCGCGCATTGACGGGCGGCGTGCCGGCCGCGTGCGCACTCGGCTCGGTCGAGGCGGTCGCG GGCGATGCGTCGCCGGCCGCGCCGCTCGCGATTCATTTCCTCGCGAGCCGCACGCCGGCCGACTCGATCGAGAATCCGCG CCAGGTCAGCGCGTATCACTATCCGGCGCAGTACGGCCCGCGTGCGCCGACGTTCGCGCGCGCCGCCGCGTGGGCCGACG GTGAAGCGAAGCCGGTGCTGTTCGTCTCGGGCACCGCGAGCATCGTCGGGCACCGCACCGTGCATCGCGGCGACGTCGTC GCGCAGACGCGCGAGACGGTCGCGAACCTCGCGGCCGTGCTCGAGCAGGCCGCGCGGCAGGGGCACGGGCCGTTCTCGCT CGCGGACCTCGGCTACCGCGTCTACGTGCGCGACGCAGGCGACACCGCGGCGCTGGCCGCGATCGGCCGCGTGCTGCGCG AGGCCGCCGGTCCTCACGTGCGGCCGCTGTTCGTTCATGCGGACGTGTGTCGCGACGACCTGCTGGTCGAGATCGAGGCC AGCGCCGGTCATGCGATGGAGTGGCTGTCATGA
Upstream 100 bases:
>100_bases AGGCGACGGACTCGATCGCGTGTTTCCCGGCGCGCTGGGTGCGGTGTGCATCGGCGCGGCGGGAACCCCGGACGCGTCGC GCGCGGCGGCCATGGCGCGG
Downstream 100 bases:
>100_bases AGCGCGAGAGCCTCACGATCCGGCAACCGGTCCGGCCCGCGGCCGGTGTCGACGAAGCGTGCCGGCGTTCGTCGGCGAGT CATACACTTTTGTCAGGATC
Product: endoribonuclease L-PSP
Products: NA
Alternate protein names: Pteridine-Dependent Dioxygenase; Pteridine-Dependent Deoxygenase Like Protein; FkbO Protein; Pteridine-Dependent Deoxygenase; Dioxygenase
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MLTDAAPGLPVAPVQMALLGAEVAPGEAVCELWQCDAHDLRGERRGPLHYRYSEAAGLVFGSLVVHETDAAYDASRDGGT PLERATFDAYRALFDLLDTLGMPHPLRIWNTVPAINAVQFGVERYRQFNIGRQRAFDACRRALTGGVPAACALGSVEAVA GDASPAAPLAIHFLASRTPADSIENPRQVSAYHYPAQYGPRAPTFARAAAWADGEAKPVLFVSGTASIVGHRTVHRGDVV AQTRETVANLAAVLEQAARQGHGPFSLADLGYRVYVRDAGDTAALAAIGRVLREAAGPHVRPLFVHADVCRDDLLVEIEA SAGHAMEWLS
Sequences:
>Translated_330_residues MLTDAAPGLPVAPVQMALLGAEVAPGEAVCELWQCDAHDLRGERRGPLHYRYSEAAGLVFGSLVVHETDAAYDASRDGGT PLERATFDAYRALFDLLDTLGMPHPLRIWNTVPAINAVQFGVERYRQFNIGRQRAFDACRRALTGGVPAACALGSVEAVA GDASPAAPLAIHFLASRTPADSIENPRQVSAYHYPAQYGPRAPTFARAAAWADGEAKPVLFVSGTASIVGHRTVHRGDVV AQTRETVANLAAVLEQAARQGHGPFSLADLGYRVYVRDAGDTAALAAIGRVLREAAGPHVRPLFVHADVCRDDLLVEIEA SAGHAMEWLS >Mature_330_residues MLTDAAPGLPVAPVQMALLGAEVAPGEAVCELWQCDAHDLRGERRGPLHYRYSEAAGLVFGSLVVHETDAAYDASRDGGT PLERATFDAYRALFDLLDTLGMPHPLRIWNTVPAINAVQFGVERYRQFNIGRQRAFDACRRALTGGVPAACALGSVEAVA GDASPAAPLAIHFLASRTPADSIENPRQVSAYHYPAQYGPRAPTFARAAAWADGEAKPVLFVSGTASIVGHRTVHRGDVV AQTRETVANLAAVLEQAARQGHGPFSLADLGYRVYVRDAGDTAALAAIGRVLREAAGPHVRPLFVHADVCRDDLLVEIEA SAGHAMEWLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35174; Mature: 35174
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTDAAPGLPVAPVQMALLGAEVAPGEAVCELWQCDAHDLRGERRGPLHYRYSEAAGLVF CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCHHHCCCCCCCCCEEEHHHHHHHHH GSLVVHETDAAYDASRDGGTPLERATFDAYRALFDLLDTLGMPHPLRIWNTVPAINAVQF HHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHH GVERYRQFNIGRQRAFDACRRALTGGVPAACALGSVEAVAGDASPAAPLAIHFLASRTPA HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHCCHHHHCCCCCCCCHHHHHHHHCCCCH DSIENPRQVSAYHYPAQYGPRAPTFARAAAWADGEAKPVLFVSGTASIVGHRTVHRGDVV HHCCCCCCEEEEECCHHCCCCCCCHHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCCHHH AQTRETVANLAAVLEQAARQGHGPFSLADLGYRVYVRDAGDTAALAAIGRVLREAAGPHV HHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC RPLFVHADVCRDDLLVEIEASAGHAMEWLS EEEEEEHHHCCCCEEEEEECCCCCHHHHCC >Mature Secondary Structure MLTDAAPGLPVAPVQMALLGAEVAPGEAVCELWQCDAHDLRGERRGPLHYRYSEAAGLVF CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCHHHCCCCCCCCCEEEHHHHHHHHH GSLVVHETDAAYDASRDGGTPLERATFDAYRALFDLLDTLGMPHPLRIWNTVPAINAVQF HHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHH GVERYRQFNIGRQRAFDACRRALTGGVPAACALGSVEAVAGDASPAAPLAIHFLASRTPA HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHCCHHHHCCCCCCCCHHHHHHHHCCCCH DSIENPRQVSAYHYPAQYGPRAPTFARAAAWADGEAKPVLFVSGTASIVGHRTVHRGDVV HHCCCCCCEEEEECCHHCCCCCCCHHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCCHHH AQTRETVANLAAVLEQAARQGHGPFSLADLGYRVYVRDAGDTAALAAIGRVLREAAGPHV HHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC RPLFVHADVCRDDLLVEIEASAGHAMEWLS EEEEEEHHHCCCCEEEEEECCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA