| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is fadN [H]
Identifier: 116690740
GI number: 116690740
Start: 3012702
End: 3015137
Strand: Reverse
Name: fadN [H]
Synonym: Bcen2424_2720
Alternate gene names: 116690740
Gene position: 3015137-3012702 (Counterclockwise)
Preceding gene: 116690741
Following gene: 116690739
Centisome position: 86.54
GC content: 66.83
Gene sequence:
>2436_bases GTGAGCAATTTCCTGATTCGCAAGGTCGCCGTGCTGGGCGCCGGCGTGATGGGCGCGCAGATCGCCGCGCATCTCGTCAA CGCGCGCGTGCCGGTGCTGCTGTTCGACCTGCCGGCCAAGGAAGGCCCGAAAAACGCGATTGCGCTGAAGGCGATCGAAA ACCTGAAGAAGCTGTCGCCCGCGCCGTTCGGCGTGAAGGACGATGCGAAGTACCTCGAGGCGGCGAACTACGAAGACGAC ATCGCGAAGCTCGCCGAATGCGACGTCGTGATCGAAGCGATCGCCGAGCGGATGGACTGGAAACACGACCTGTACAAGAA GGTCGCGCCGCACATCGCGCCGAACGCGATCTTCGCGACCAACACGTCGGGCCTGTCGATCACGAAGCTGTCCGAAGGTT TCTCGGACGAGTTGAAGGCGCGCTTCTGCGGCGTGCACTTCTTCAACCCGCCGCGCTACATGCACCTCGTCGAGCTGATC CCGACCGCGCATACGCGTCCGGAAATCCTCGACCAGCTCGAAACCTTCCTGACGAGCGTCGTCGGCAAGGGCGTCGTGCG CGCGAAGGACACGCCGAACTTCATCGCGAACCGCGTCGGCATCTTCTCGATCCTCGCGGTGATCACCGAGGCCGCGAAGT TCGGCCTGCGCTTCGACGAAGTCGACGATCTGACCGGCAGCCGCCTCGGCCGCGCGAAGTCGGCGACGTTCCGCACCGCG GACGTGGTCGGCCTCGACACGATGGCGCACGTGATCAAGACGATGCAGGACAACCTCGCCGACGATCCGTTCTTCCCGGT CTACCAGACGCCCGCCGTGCTCGCCGAACTGGTGAAGCAGGGCGCGCTCGGCCAGAAGACGGGCGGCGGGTTCTACAAGA AGGAAGGCAAGGCGATCAAGGTACTCGACGCGAAGACGGGCAGCTACGTCGATTCGGGCGCGAAGGCGGACGAAACGGTC GGCCGCATCCTGAAGCGCCCGCCGGCGGAACGCCTGAAGCTGCTGCGCGAGACGGATCATCCGCACGCGCAGTTCCTGTG GTCGATCTTCCGCGACGTGTTCCACTACATCGGCGTGCATCTCGAGTCGATCGCCGACAACGCGCGCGACGTCGACCTCG CGATCCGCTGGGGCTTCGGCTGGAACGAAGGCCCGTTCGAAGGCTGGCAGGCGGCCGGCTGGAAGCAGGTCGCCGAGTGG GTGCAGGAAGACATCGCGGCCGGCAAGGCGCTCGCGAACGTGCCGCTGCCGTCGTGGGTGCTCGAGGGCCCGGTCGCCGA GCAGGGCGGCGTGCACACGGCCGAAGGCTCGTGGGCACCGGCATCGAAGCGCTTCGTGCCGCGTTCGGACCTGGCCGTGT ACCGCAAGCAGGTGTTCCGCGCGCCGCTGCTGGGCGAAGCGGGCGCCGATCCGAAGACGTACGGCAAGACGCTGTTCGAA ACCGACGCGGTGCGCGCGTGGGTCGACGATCGTGCCGGTGAAGACGACGTCGTGATCGTGTCGTTCAAGTCGAAGATGAA CACGATCGGACCGAGCGTGATCGACGGCCTCGTGCAGGCGATCGAGCTCGCGGAGAAGGACTACAAGGGCGTGGTGATCT GGCAGCCGACGTCGCTGAAGCTCGGCACGCCGGGCGGCCCGTTCTCGGCCGGCGCGAACCTCGAGGAGGCGATGCCCGCG TTCATGATGGGCGGCGCGAAGGGCATCGAGCCGTTCGTGAAGAAGTTCCAGGAAGGCATGCTGCGCGTGAAGTACGCGAA CGTGCCGGTCGTGGCAGCCGTGTCGGGCATCGCGCTCGGCGGCGGGTGCGAGCTGATGCTGCACAGCGCGAAGCGCGTCG TGCACGTCGAGAGCTACATCGGCCTCGTCGAAGTGGGCGTCGGCCTCGTGCCGGCCGGCGGCGGCCTGAAGGAAGCGGCG CTGCGCGCGGCGGACGCCGCGACGGCCGCGAACGCGACCACCGACATCCTGAAGTTCGTCACGAAGTCGTTCGAGAACGC GGCGATGGCGAAGGTGTCGGCGTCCGCGCACGACGCACGGGCGATGGGCTACGTGAAGCCGTCCGACACGATCGTCTTCA ACGTGTTCGAACTGCTCGACACCGCGAAGAAGGAAGCGCGTGCGCTGGCCGACACCGGCTACCGCGCACCGCTGCGCGCG AAGGACGTGCCGGTCGCGGGCCGTTCGGCGATCGCGACGATCAAGGCATCGCTCGTCAACATGCGTGACGGCCGCTTCAT CAGCGACCACGACTACCTGATCGCGAGCCGCATCGCCGAAGCCGTGTGCGGCGGCGACGTCGAAGCCGGCAGCCTCGTCG ACGAAGAATGGCTGCTCGCGCTGGAGCGCCGCGCGTTCGTCGAGCTGCTCGGTACGCAGAAGACGCAGGAACGGATCATG GGCATGTTGCAGACCGGCAAGCCGGTGCGTAACTGA
Upstream 100 bases:
>100_bases GCGCCGCGTGCCGCGCCGCCCGAACGCAACGATTCCTGGTACTCACTTCGCCGTGCAGCCCTCACATTCCGCGCTGCACG ACACTATCCGGAGACATCCC
Downstream 100 bases:
>100_bases GCGAGCAGACAAGGAGTCTGAAATGAGCAAACAACTGCAAGACGCATACATCGTCGCCGCCAGCCGCACGCCGATCGGCA AGGCCCCGCGCGGTGTCTTC
Product: 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 811; Mature: 810
Protein sequence:
>811_residues MSNFLIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNAIALKAIENLKKLSPAPFGVKDDAKYLEAANYEDD IAKLAECDVVIEAIAERMDWKHDLYKKVAPHIAPNAIFATNTSGLSITKLSEGFSDELKARFCGVHFFNPPRYMHLVELI PTAHTRPEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGSRLGRAKSATFRTA DVVGLDTMAHVIKTMQDNLADDPFFPVYQTPAVLAELVKQGALGQKTGGGFYKKEGKAIKVLDAKTGSYVDSGAKADETV GRILKRPPAERLKLLRETDHPHAQFLWSIFRDVFHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEW VQEDIAAGKALANVPLPSWVLEGPVAEQGGVHTAEGSWAPASKRFVPRSDLAVYRKQVFRAPLLGEAGADPKTYGKTLFE TDAVRAWVDDRAGEDDVVIVSFKSKMNTIGPSVIDGLVQAIELAEKDYKGVVIWQPTSLKLGTPGGPFSAGANLEEAMPA FMMGGAKGIEPFVKKFQEGMLRVKYANVPVVAAVSGIALGGGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAA LRAADAATAANATTDILKFVTKSFENAAMAKVSASAHDARAMGYVKPSDTIVFNVFELLDTAKKEARALADTGYRAPLRA KDVPVAGRSAIATIKASLVNMRDGRFISDHDYLIASRIAEAVCGGDVEAGSLVDEEWLLALERRAFVELLGTQKTQERIM GMLQTGKPVRN
Sequences:
>Translated_811_residues MSNFLIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNAIALKAIENLKKLSPAPFGVKDDAKYLEAANYEDD IAKLAECDVVIEAIAERMDWKHDLYKKVAPHIAPNAIFATNTSGLSITKLSEGFSDELKARFCGVHFFNPPRYMHLVELI PTAHTRPEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGSRLGRAKSATFRTA DVVGLDTMAHVIKTMQDNLADDPFFPVYQTPAVLAELVKQGALGQKTGGGFYKKEGKAIKVLDAKTGSYVDSGAKADETV GRILKRPPAERLKLLRETDHPHAQFLWSIFRDVFHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEW VQEDIAAGKALANVPLPSWVLEGPVAEQGGVHTAEGSWAPASKRFVPRSDLAVYRKQVFRAPLLGEAGADPKTYGKTLFE TDAVRAWVDDRAGEDDVVIVSFKSKMNTIGPSVIDGLVQAIELAEKDYKGVVIWQPTSLKLGTPGGPFSAGANLEEAMPA FMMGGAKGIEPFVKKFQEGMLRVKYANVPVVAAVSGIALGGGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAA LRAADAATAANATTDILKFVTKSFENAAMAKVSASAHDARAMGYVKPSDTIVFNVFELLDTAKKEARALADTGYRAPLRA KDVPVAGRSAIATIKASLVNMRDGRFISDHDYLIASRIAEAVCGGDVEAGSLVDEEWLLALERRAFVELLGTQKTQERIM GMLQTGKPVRN >Mature_810_residues SNFLIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNAIALKAIENLKKLSPAPFGVKDDAKYLEAANYEDDI AKLAECDVVIEAIAERMDWKHDLYKKVAPHIAPNAIFATNTSGLSITKLSEGFSDELKARFCGVHFFNPPRYMHLVELIP TAHTRPEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGSRLGRAKSATFRTAD VVGLDTMAHVIKTMQDNLADDPFFPVYQTPAVLAELVKQGALGQKTGGGFYKKEGKAIKVLDAKTGSYVDSGAKADETVG RILKRPPAERLKLLRETDHPHAQFLWSIFRDVFHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWV QEDIAAGKALANVPLPSWVLEGPVAEQGGVHTAEGSWAPASKRFVPRSDLAVYRKQVFRAPLLGEAGADPKTYGKTLFET DAVRAWVDDRAGEDDVVIVSFKSKMNTIGPSVIDGLVQAIELAEKDYKGVVIWQPTSLKLGTPGGPFSAGANLEEAMPAF MMGGAKGIEPFVKKFQEGMLRVKYANVPVVAAVSGIALGGGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAAL RAADAATAANATTDILKFVTKSFENAAMAKVSASAHDARAMGYVKPSDTIVFNVFELLDTAKKEARALADTGYRAPLRAK DVPVAGRSAIATIKASLVNMRDGRFISDHDYLIASRIAEAVCGGDVEAGSLVDEEWLLALERRAFVELLGTQKTQERIMG MLQTGKPVRN
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Mitochondria or Peroxisomes [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-hydroxyacyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI296179429, Length=299, Percent_Identity=32.4414715719064, Blast_Score=123, Evalue=8e-28, Organism=Homo sapiens, GI296179427, Length=312, Percent_Identity=31.0897435897436, Blast_Score=119, Evalue=2e-26, Organism=Homo sapiens, GI68989263, Length=427, Percent_Identity=24.5901639344262, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI261878539, Length=427, Percent_Identity=24.5901639344262, Blast_Score=96, Evalue=2e-19, Organism=Homo sapiens, GI20127408, Length=423, Percent_Identity=26.0047281323877, Blast_Score=91, Evalue=5e-18, Organism=Escherichia coli, GI1787661, Length=323, Percent_Identity=30.030959752322, Blast_Score=103, Evalue=5e-23, Organism=Escherichia coli, GI1790281, Length=220, Percent_Identity=29.0909090909091, Blast_Score=83, Evalue=6e-17, Organism=Escherichia coli, GI1788682, Length=331, Percent_Identity=25.0755287009063, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17553560, Length=299, Percent_Identity=32.7759197324415, Blast_Score=119, Evalue=7e-27, Organism=Caenorhabditis elegans, GI17563036, Length=294, Percent_Identity=31.6326530612245, Blast_Score=116, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17549919, Length=297, Percent_Identity=31.986531986532, Blast_Score=113, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17558304, Length=388, Percent_Identity=27.319587628866, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17508953, Length=291, Percent_Identity=31.9587628865979, Blast_Score=94, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17508951, Length=291, Percent_Identity=31.9587628865979, Blast_Score=94, Evalue=4e-19, Organism=Caenorhabditis elegans, GI25144276, Length=289, Percent_Identity=32.1799307958478, Blast_Score=93, Evalue=5e-19, Organism=Caenorhabditis elegans, GI71985923, Length=295, Percent_Identity=27.7966101694915, Blast_Score=84, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71985930, Length=407, Percent_Identity=22.1130221130221, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI24583077, Length=302, Percent_Identity=25.8278145695364, Blast_Score=78, Evalue=3e-14, Organism=Drosophila melanogaster, GI24583079, Length=302, Percent_Identity=25.8278145695364, Blast_Score=78, Evalue=3e-14, Organism=Drosophila melanogaster, GI19921000, Length=302, Percent_Identity=25.8278145695364, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI45549573, Length=228, Percent_Identity=26.7543859649123, Blast_Score=72, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =1.1.1.35 [H]
Molecular weight: Translated: 87553; Mature: 87421
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNFLIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNAIALKAIENLKKLSP CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC APFGVKDDAKYLEAANYEDDIAKLAECDVVIEAIAERMDWKHDLYKKVAPHIAPNAIFAT CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEEEE NTSGLSITKLSEGFSDELKARFCGVHFFNPPRYMHLVELIPTAHTRPEILDQLETFLTSV CCCCCEEEHHHCCHHHHHHHHHHCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGSRLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCCHH DVVGLDTMAHVIKTMQDNLADDPFFPVYQTPAVLAELVKQGALGQKTGGGFYKKEGKAIK HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCEEE VLDAKTGSYVDSGAKADETVGRILKRPPAERLKLLRETDHPHAQFLWSIFRDVFHYIGVH EEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWVQEDIAAGKALANVPLPSWV HHHHHCCCCCEEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCHHHCCCCCHHH LEGPVAEQGGVHTAEGSWAPASKRFVPRSDLAVYRKQVFRAPLLGEAGADPKTYGKTLFE HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH TDAVRAWVDDRAGEDDVVIVSFKSKMNTIGPSVIDGLVQAIELAEKDYKGVVIWQPTSLK HHHHHHHHHCCCCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEE LGTPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQEGMLRVKYANVPVVAAVSGIALG ECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHCEEEC GGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAALRAADAATAANATTDILKFV CCHHHHHHHHHHHEEHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHH TKSFENAAMAKVSASAHDARAMGYVKPSDTIVFNVFELLDTAKKEARALADTGYRAPLRA HHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC KDVPVAGRSAIATIKASLVNMRDGRFISDHDYLIASRIAEAVCGGDVEAGSLVDEEWLLA CCCCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LERRAFVELLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SNFLIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNAIALKAIENLKKLSP CCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC APFGVKDDAKYLEAANYEDDIAKLAECDVVIEAIAERMDWKHDLYKKVAPHIAPNAIFAT CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEEEE NTSGLSITKLSEGFSDELKARFCGVHFFNPPRYMHLVELIPTAHTRPEILDQLETFLTSV CCCCCEEEHHHCCHHHHHHHHHHCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGSRLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCCHH DVVGLDTMAHVIKTMQDNLADDPFFPVYQTPAVLAELVKQGALGQKTGGGFYKKEGKAIK HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCEEE VLDAKTGSYVDSGAKADETVGRILKRPPAERLKLLRETDHPHAQFLWSIFRDVFHYIGVH EEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWVQEDIAAGKALANVPLPSWV HHHHHCCCCCEEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCHHHCCCCCHHH LEGPVAEQGGVHTAEGSWAPASKRFVPRSDLAVYRKQVFRAPLLGEAGADPKTYGKTLFE HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH TDAVRAWVDDRAGEDDVVIVSFKSKMNTIGPSVIDGLVQAIELAEKDYKGVVIWQPTSLK HHHHHHHHHCCCCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEE LGTPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQEGMLRVKYANVPVVAAVSGIALG ECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHCEEEC GGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAALRAADAATAANATTDILKFV CCHHHHHHHHHHHEEHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHH TKSFENAAMAKVSASAHDARAMGYVKPSDTIVFNVFELLDTAKKEARALADTGYRAPLRA HHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC KDVPVAGRSAIATIKASLVNMRDGRFISDHDYLIASRIAEAVCGGDVEAGSLVDEEWLLA CCCCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LERRAFVELLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]