Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

Click here to switch to the map view.

The map label for this gene is yijE [C]

Identifier: 116690727

GI number: 116690727

Start: 2997709

End: 2998644

Strand: Direct

Name: yijE [C]

Synonym: Bcen2424_2707

Alternate gene names: 116690727

Gene position: 2997709-2998644 (Clockwise)

Preceding gene: 116690725

Following gene: 116690732

Centisome position: 86.04

GC content: 71.9

Gene sequence:

>936_bases
ATGACCGCGCTTGCCGCCGCCCCCGTGCGCCGCACCCTCGATACACGTGCCGTCGGCCTGATGTTGCTGCTGTGCGCGAT
CTGGGGCTTCCAGCAGGTCGCGATCAAAAGCACGAACGCCGCGATCGCGCCGATGTTCCAGGCCGGGCTGCGCTCGGCGA
TCGCCGCGCTGCTGCTATGGGGCTGGGCGCGCTCGCGCGGCACGCCGCTGTTTCAGGCGGACGGCACGTTCGGTGCGGGG
CTCGCGGCCGGTGCGCTGTTCGCCGGCGAATTCATCTGCGTGTTCTTCGGGCTGACGCTGACGAGCGCGTCGCACATGGC
GATCTTCCTGTACACGGCGCCGTGCTTCACCGCGCTCGGCCTGCACCTGTTCGCACCGGGCGAGCGGCTGCAGCGCGCGC
AATGGGCCGGCGTCGGCCTTGCATTCGCCGGCATCGCGCTCGCGTTCGCGGACGGCTTCCTGAAGCCGCGCATGCCCGGC
GCGTCCGTGCTGGCCGGGCTCGCCGGCGACGCGCTCGGCATCCTCGGCGGCGCGATGTGGGCCGCGACGACGGTCGTCGT
GCGCTCGACGGCGCTCGCGCGGGCCAGCGCGAGCAAGACGCTGTTCTACCAGCTCGCGGTATCGGCGCTCGTTCTGGTCG
CGCTCGCCGCGCTGTGCGGCCAGATGTCGTTCGCGCAGGTCACGCCGGTCGCGCTCGCGAGCCTCGCGTACCAGTCGGTG
ATCGTCGCGTTCGTCAGCTACCTGTCGTGGTTCTGGCTGCTGACGCGCTACAGCGCGTCCCGGCTGTCCGTCTTCACGTT
CCTGTCGCCGCTGTTCGGCGTCGCGTTCGGCGTGCTGCTGCTCGGCGAATCGGTCGGCTGGCGCTTCATGTCGGCGGCCG
CGCTCGTGCTGACCGGCATCGCGCTCGTCAACGCGCCGCCGCGCCGGCGGGCGTGA

Upstream 100 bases:

>100_bases
GTTGCCGCCACACTGCCGTGCGAAACCGCCGATTCGAGCGCGCCGGACGCGCCGCCCGCCTAACCTCGTTGCCGCCATGC
CCGCCCCACGAGGCGCGCCG

Downstream 100 bases:

>100_bases
CGGCCGGCGCAACACGCGCGGGCAATAAAAAAGGCTGCCGGTCGGGCAGCCCTCTTCGATACGGCCGGGGGTGGGCTCGC
GCCACGCGCGTCCGTCATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MTALAAAPVRRTLDTRAVGLMLLLCAIWGFQQVAIKSTNAAIAPMFQAGLRSAIAALLLWGWARSRGTPLFQADGTFGAG
LAAGALFAGEFICVFFGLTLTSASHMAIFLYTAPCFTALGLHLFAPGERLQRAQWAGVGLAFAGIALAFADGFLKPRMPG
ASVLAGLAGDALGILGGAMWAATTVVVRSTALARASASKTLFYQLAVSALVLVALAALCGQMSFAQVTPVALASLAYQSV
IVAFVSYLSWFWLLTRYSASRLSVFTFLSPLFGVAFGVLLLGESVGWRFMSAAALVLTGIALVNAPPRRRA

Sequences:

>Translated_311_residues
MTALAAAPVRRTLDTRAVGLMLLLCAIWGFQQVAIKSTNAAIAPMFQAGLRSAIAALLLWGWARSRGTPLFQADGTFGAG
LAAGALFAGEFICVFFGLTLTSASHMAIFLYTAPCFTALGLHLFAPGERLQRAQWAGVGLAFAGIALAFADGFLKPRMPG
ASVLAGLAGDALGILGGAMWAATTVVVRSTALARASASKTLFYQLAVSALVLVALAALCGQMSFAQVTPVALASLAYQSV
IVAFVSYLSWFWLLTRYSASRLSVFTFLSPLFGVAFGVLLLGESVGWRFMSAAALVLTGIALVNAPPRRRA
>Mature_310_residues
TALAAAPVRRTLDTRAVGLMLLLCAIWGFQQVAIKSTNAAIAPMFQAGLRSAIAALLLWGWARSRGTPLFQADGTFGAGL
AAGALFAGEFICVFFGLTLTSASHMAIFLYTAPCFTALGLHLFAPGERLQRAQWAGVGLAFAGIALAFADGFLKPRMPGA
SVLAGLAGDALGILGGAMWAATTVVVRSTALARASASKTLFYQLAVSALVLVALAALCGQMSFAQVTPVALASLAYQSVI
VAFVSYLSWFWLLTRYSASRLSVFTFLSPLFGVAFGVLLLGESVGWRFMSAAALVLTGIALVNAPPRRRA

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32464; Mature: 32333

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALAAAPVRRTLDTRAVGLMLLLCAIWGFQQVAIKSTNAAIAPMFQAGLRSAIAALLLW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
GWARSRGTPLFQADGTFGAGLAAGALFAGEFICVFFGLTLTSASHMAIFLYTAPCFTALG
HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH
LHLFAPGERLQRAQWAGVGLAFAGIALAFADGFLKPRMPGASVLAGLAGDALGILGGAMW
HHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AATTVVVRSTALARASASKTLFYQLAVSALVLVALAALCGQMSFAQVTPVALASLAYQSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IVAFVSYLSWFWLLTRYSASRLSVFTFLSPLFGVAFGVLLLGESVGWRFMSAAALVLTGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ALVNAPPRRRA
HHHCCCCCCCC
>Mature Secondary Structure 
TALAAAPVRRTLDTRAVGLMLLLCAIWGFQQVAIKSTNAAIAPMFQAGLRSAIAALLLW
CCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
GWARSRGTPLFQADGTFGAGLAAGALFAGEFICVFFGLTLTSASHMAIFLYTAPCFTALG
HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH
LHLFAPGERLQRAQWAGVGLAFAGIALAFADGFLKPRMPGASVLAGLAGDALGILGGAMW
HHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AATTVVVRSTALARASASKTLFYQLAVSALVLVALAALCGQMSFAQVTPVALASLAYQSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IVAFVSYLSWFWLLTRYSASRLSVFTFLSPLFGVAFGVLLLGESVGWRFMSAAALVLTGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ALVNAPPRRRA
HHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]