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The map label for this gene is ybeY [C]

Identifier: 116690715

GI number: 116690715

Start: 2984823

End: 2985599

Strand: Direct

Name: ybeY [C]

Synonym: Bcen2424_2695

Alternate gene names: 116690715

Gene position: 2984823-2985599 (Clockwise)

Preceding gene: 116690714

Following gene: 116690716

Centisome position: 85.67

GC content: 68.6

Gene sequence:

>777_bases
ATGAAATCCTCCCGTTCCCGCAAGTCCGGCCGCGCCCCGTCCGCCGCGCCCGAATCCCCCCGCCTTTCGCTGTTCGACGC
GAAGGGCAAAGCCCGCACCGTCAACGCGCAAGGGCTGCGGATCGACTTCCCGGACGGCCGCAGCCTGATGTTCGACCTGT
CGGGCAGCTCGGGCGACGCGGCCGTCGCGATCGTCGCGCAGCACAACGATCCGGCGATGCGCGCGAAGCTCGCGCTGCAG
CCCGAGCACTACGACAGCGTGACGCTGCACGTCGGCGCCGAATTCGCGCCGCGCGAGGACGACCCCGAAGACGAGCCGCG
CGCGCTGGAGCTCGACCTGTCCGTGCAGTACGGCGACGAGATCACGAGCGACGTGCGCAAGACGCTGCCGAAGCGCAAGC
TGATCGCCGAGTGGATCGAGCCGGCGCTGTTCGCGAGCGCGCAGCTCACCGTGCGCTTCGTCGGCGAAAACGAAGGCCGG
ACGCTGAATGCCGGCTACCGCCACAAGGACTATCCGACCAACGTGCTGACCTTCGCGTACGACGCGGCACCCGACGGCAC
CGTGATCGGCGACCTCGTGCTGTGCTGCCCGGTGGTCGAGAAGGAAGCGCACGACCAGGGCAAGCCGCTCGCGGCCCATT
ACGCGCACCTGCTGGTGCACGGCGCGCTGCACGCGCAGGGCTACGACCACGAGACGAGCGACGAGGACGCCGCCGAAATG
GAAGCGCTCGAAGTCGACATCCTCGCGAAACTGGGTTTCCCGAACCCGTACCAGTAA

Upstream 100 bases:

>100_bases
GCGCGCCGGGCTTTTTTTTCGCCCGCACGCAGCCGGTCCGAATTCGGGCGCGATCGGCCGTTTGGTGTATCCTCAACGCG
TCCCAATCGCCGTACGCGTC

Downstream 100 bases:

>100_bases
GCCGTCCGCCCGATGCGTAACGCCGCGATGCTGCCGCCCGCCTACCCGCCGTCGATCGGCGAAGGCCGTCTGCTGACGGA
AGACGAGCTCGCGGCGTCGC

Product: unkown domain/putative metalloprotease fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MKSSRSRKSGRAPSAAPESPRLSLFDAKGKARTVNAQGLRIDFPDGRSLMFDLSGSSGDAAVAIVAQHNDPAMRAKLALQ
PEHYDSVTLHVGAEFAPREDDPEDEPRALELDLSVQYGDEITSDVRKTLPKRKLIAEWIEPALFASAQLTVRFVGENEGR
TLNAGYRHKDYPTNVLTFAYDAAPDGTVIGDLVLCCPVVEKEAHDQGKPLAAHYAHLLVHGALHAQGYDHETSDEDAAEM
EALEVDILAKLGFPNPYQ

Sequences:

>Translated_258_residues
MKSSRSRKSGRAPSAAPESPRLSLFDAKGKARTVNAQGLRIDFPDGRSLMFDLSGSSGDAAVAIVAQHNDPAMRAKLALQ
PEHYDSVTLHVGAEFAPREDDPEDEPRALELDLSVQYGDEITSDVRKTLPKRKLIAEWIEPALFASAQLTVRFVGENEGR
TLNAGYRHKDYPTNVLTFAYDAAPDGTVIGDLVLCCPVVEKEAHDQGKPLAAHYAHLLVHGALHAQGYDHETSDEDAAEM
EALEVDILAKLGFPNPYQ
>Mature_258_residues
MKSSRSRKSGRAPSAAPESPRLSLFDAKGKARTVNAQGLRIDFPDGRSLMFDLSGSSGDAAVAIVAQHNDPAMRAKLALQ
PEHYDSVTLHVGAEFAPREDDPEDEPRALELDLSVQYGDEITSDVRKTLPKRKLIAEWIEPALFASAQLTVRFVGENEGR
TLNAGYRHKDYPTNVLTFAYDAAPDGTVIGDLVLCCPVVEKEAHDQGKPLAAHYAHLLVHGALHAQGYDHETSDEDAAEM
EALEVDILAKLGFPNPYQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=134, Percent_Identity=47.0149253731343, Blast_Score=114, Evalue=6e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 28128; Mature: 28128

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSRSRKSGRAPSAAPESPRLSLFDAKGKARTVNAQGLRIDFPDGRSLMFDLSGSSGDA
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCEEEECCCCCEEEEEECCCCCCE
AVAIVAQHNDPAMRAKLALQPEHYDSVTLHVGAEFAPREDDPEDEPRALELDLSVQYGDE
EEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCH
ITSDVRKTLPKRKLIAEWIEPALFASAQLTVRFVGENEGRTLNAGYRHKDYPTNVLTFAY
HHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEE
DAAPDGTVIGDLVLCCPVVEKEAHDQGKPLAAHYAHLLVHGALHAQGYDHETSDEDAAEM
ECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
EALEVDILAKLGFPNPYQ
HHHHEEEHEECCCCCCCC
>Mature Secondary Structure
MKSSRSRKSGRAPSAAPESPRLSLFDAKGKARTVNAQGLRIDFPDGRSLMFDLSGSSGDA
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCEEEECCCCCEEEEEECCCCCCE
AVAIVAQHNDPAMRAKLALQPEHYDSVTLHVGAEFAPREDDPEDEPRALELDLSVQYGDE
EEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCH
ITSDVRKTLPKRKLIAEWIEPALFASAQLTVRFVGENEGRTLNAGYRHKDYPTNVLTFAY
HHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEE
DAAPDGTVIGDLVLCCPVVEKEAHDQGKPLAAHYAHLLVHGALHAQGYDHETSDEDAAEM
ECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
EALEVDILAKLGFPNPYQ
HHHHEEEHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA