| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116690692
Identifier: 116690692
GI number: 116690692
Start: 2960844
End: 2961671
Strand: Reverse
Name: 116690692
Synonym: Bcen2424_2672
Alternate gene names: NA
Gene position: 2961671-2960844 (Counterclockwise)
Preceding gene: 116690693
Following gene: 116690691
Centisome position: 85.01
GC content: 61.11
Gene sequence:
>828_bases ATGGACACCAAAACGACGCATGTGATGCCGTGGCGTATCGAGGACATCGACCTGAACCGGATCGATCGTCAGCGTGCGGC CGCGAACGAGGATCTGCTGCTGCTGCTGTGCGCGTCGTCGTTCATCGAGAGCGGCTCGGATCTCTATACGAGCAATCTGA GCGAATTCTTCAATGACGATCCGGAAGTCTCCGCATGGCTCAACAATGCATGGGAGCCCGAAGAATTGCAGCACGGGCGC GCGCTGAAGGCCTACATCGCGCACGTGTGGCCCGAGTTCGACTGGGATACCGCCTTCGCGAATTTCTTTGCCGAGTATTC GAAGACCTGCTCGGTCGAGGCGTTCGAGAAAACCCGCGCGCTCGAAATGGTCGCACGCTGCGTCGTCGAGACGGGCACGG CCACGCTCTATCGCGCGATCAACGAATGCTCGGACGAGCCGGTGCTGAAGGAAATCACCGACAACATCCGCACCGACGAA GTGCGTCACTACAAGCACTTCTTCAAGTTCTTCAAGAAGTACAACCAGGTCGAAGGCAACGGGCGGCTCGCGGTGCTCGG GGCCCTCGCGCGCCGCGTGATGGAAATCAAGAACGAGGATTCCGAGATCGCGCTGCGCCACGTGTTCGCGATCCGCTATC CGGATCGCGTCGGCGACAGCCAGTACAACCGCGAGCGCGCCGCGCGCATCAACTCGCTGGTGCGGCGCAACCTGTCGGCC GACATGTGCGTGAAGATGCTGCTCAAGCCGCTCGACCTGCCCGCGAAGATCCAGCCGGGCGTCCACTATCCACTCACGAA GATCACGCGGCACGTTTTCCTGCGCTGA
Upstream 100 bases:
>100_bases GATTCACTATAAACGCAAGTAAAACGCCGCCTGCGGATCGGCTGGCGCCTGTGCCCCAGGCATGGGCCGGCCTCCGCGCG ACGACTGGGAGCGCACTACC
Downstream 100 bases:
>100_bases TCGCCGCGGCACGGCCCGGCGCGCGTATGCTGACGCATCCTCATCCGATCCGCGCCCGGGCCACGCCATCATGACCGATA CCCATCGCCACGCGCTCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MDTKTTHVMPWRIEDIDLNRIDRQRAAANEDLLLLLCASSFIESGSDLYTSNLSEFFNDDPEVSAWLNNAWEPEELQHGR ALKAYIAHVWPEFDWDTAFANFFAEYSKTCSVEAFEKTRALEMVARCVVETGTATLYRAINECSDEPVLKEITDNIRTDE VRHYKHFFKFFKKYNQVEGNGRLAVLGALARRVMEIKNEDSEIALRHVFAIRYPDRVGDSQYNRERAARINSLVRRNLSA DMCVKMLLKPLDLPAKIQPGVHYPLTKITRHVFLR
Sequences:
>Translated_275_residues MDTKTTHVMPWRIEDIDLNRIDRQRAAANEDLLLLLCASSFIESGSDLYTSNLSEFFNDDPEVSAWLNNAWEPEELQHGR ALKAYIAHVWPEFDWDTAFANFFAEYSKTCSVEAFEKTRALEMVARCVVETGTATLYRAINECSDEPVLKEITDNIRTDE VRHYKHFFKFFKKYNQVEGNGRLAVLGALARRVMEIKNEDSEIALRHVFAIRYPDRVGDSQYNRERAARINSLVRRNLSA DMCVKMLLKPLDLPAKIQPGVHYPLTKITRHVFLR >Mature_275_residues MDTKTTHVMPWRIEDIDLNRIDRQRAAANEDLLLLLCASSFIESGSDLYTSNLSEFFNDDPEVSAWLNNAWEPEELQHGR ALKAYIAHVWPEFDWDTAFANFFAEYSKTCSVEAFEKTRALEMVARCVVETGTATLYRAINECSDEPVLKEITDNIRTDE VRHYKHFFKFFKKYNQVEGNGRLAVLGALARRVMEIKNEDSEIALRHVFAIRYPDRVGDSQYNRERAARINSLVRRNLSA DMCVKMLLKPLDLPAKIQPGVHYPLTKITRHVFLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31880; Mature: 31880
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTKTTHVMPWRIEDIDLNRIDRQRAAANEDLLLLLCASSFIESGSDLYTSNLSEFFNDD CCCCCCEECCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC PEVSAWLNNAWEPEELQHGRALKAYIAHVWPEFDWDTAFANFFAEYSKTCSVEAFEKTRA CCHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH LEMVARCVVETGTATLYRAINECSDEPVLKEITDNIRTDEVRHYKHFFKFFKKYNQVEGN HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC GRLAVLGALARRVMEIKNEDSEIALRHVFAIRYPDRVGDSQYNRERAARINSLVRRNLSA CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCH DMCVKMLLKPLDLPAKIQPGVHYPLTKITRHVFLR HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure MDTKTTHVMPWRIEDIDLNRIDRQRAAANEDLLLLLCASSFIESGSDLYTSNLSEFFNDD CCCCCCEECCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC PEVSAWLNNAWEPEELQHGRALKAYIAHVWPEFDWDTAFANFFAEYSKTCSVEAFEKTRA CCHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH LEMVARCVVETGTATLYRAINECSDEPVLKEITDNIRTDEVRHYKHFFKFFKKYNQVEGN HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC GRLAVLGALARRVMEIKNEDSEIALRHVFAIRYPDRVGDSQYNRERAARINSLVRRNLSA CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCH DMCVKMLLKPLDLPAKIQPGVHYPLTKITRHVFLR HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA