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The map label for this gene is rhaS [C]

Identifier: 116690677

GI number: 116690677

Start: 2944994

End: 2945968

Strand: Reverse

Name: rhaS [C]

Synonym: Bcen2424_2657

Alternate gene names: 116690677

Gene position: 2945968-2944994 (Counterclockwise)

Preceding gene: 116690680

Following gene: 116690676

Centisome position: 84.56

GC content: 73.33

Gene sequence:

>975_bases
ATGCCTGCCGCCGCCCCGCGTTCGATCCTGGTCCTCGCGTTTCCCCGTGCCCAATTGCTCGATGTGACGGGCCCGTTGCA
GGTGTTCGCGTCCGTCAACGAGCTCGCGCTGGAGCGCGGGCAGCCGGCGCCGTATGCGCCGCGCGTCGTGGCCGTCGAAG
CGGGGCCCGTCGAGACGTCGTCGGGCCTCGTCGTGATGGCCGAGTCGCTGCGCGCGGCCGCGCGCCGTCCCGACACGCTG
ATCGTCGCCGGCGGCAAGGGCGTGCACGCGGCGTCGAAGGACGCGCGGGTGGTGCGCTGGGTGCGGCAGCAGGCCGGGCG
CGCGCGGCGCGTGGCGTCGGTCTGCACCGGCGCGTTCCTGCTCGCCGAGGCCGGCCTGCTCGACGGGCGGCGCGCGGTCA
CGCACTGGGCGCGCTGCGACGAATTCGCGGCGCGCTACCCGAACGTGCGTGTCGAGCCCGATCCGATCTTCATCCGCGAA
GGCGCGCTGTGGACGTCGGCCGGCGTGACGGCCGGCATCGATCTCGCGCTCGCGCTGGTCGAGGAGGACCTCGGGCGGGC
GACCGCGCTCGACGTCGCGCGCGAACTCGTCGTATTCCTGAAGCGCCCGGGCGGGCAGGCGCAGTTCAGCACGATGCTGT
CGATGCAGCGCACCGCCGACCGGTTCGGCGAGCTGCACGCGTGGATGGCCGAGCACCTGACGGCCGACCTGTCGGTGCCC
GCGCTCGCCGAGCGCGTGAGCATGAGCGAGCGCAGCTTCGTGCGCCACTATCGCGCGGAAACCGGCCGAACGCCCGCGCG
TGCGGTCGAGCAGATCCGTGTCGAGGCCGCGCAACGCCTGCTCGGCGAAACGACATGGCCCGTCAAGCGGATCGCCGGGC
GTTGCGGCTTCGGTTCGGAGGAGACGCTGCGGCGCAGCTTCGTGCGCGTGCTGGGCGTATCGCCGCAGGGATATCGCGAG
CGGTTCGTGCGGTGA

Upstream 100 bases:

>100_bases
AGGGAAGGGGCGCGCCGTTCGGCACGGGATGGACAGGTCGATTCTAGGCGCGTAGTGTTTGGCGAAATTGCCATATCACC
CACGTTTTCAGCCAATCGCC

Downstream 100 bases:

>100_bases
CGTGCGACGAATGAGCGGAGCCGCGGCGGCCGCTACCCGGAACTGAACGGAAACCGGTCGGTTTCCAGTCCGAAGTGTCG
AAACTATTCAGGATCGGAGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MPAAAPRSILVLAFPRAQLLDVTGPLQVFASVNELALERGQPAPYAPRVVAVEAGPVETSSGLVVMAESLRAAARRPDTL
IVAGGKGVHAASKDARVVRWVRQQAGRARRVASVCTGAFLLAEAGLLDGRRAVTHWARCDEFAARYPNVRVEPDPIFIRE
GALWTSAGVTAGIDLALALVEEDLGRATALDVARELVVFLKRPGGQAQFSTMLSMQRTADRFGELHAWMAEHLTADLSVP
ALAERVSMSERSFVRHYRAETGRTPARAVEQIRVEAAQRLLGETTWPVKRIAGRCGFGSEETLRRSFVRVLGVSPQGYRE
RFVR

Sequences:

>Translated_324_residues
MPAAAPRSILVLAFPRAQLLDVTGPLQVFASVNELALERGQPAPYAPRVVAVEAGPVETSSGLVVMAESLRAAARRPDTL
IVAGGKGVHAASKDARVVRWVRQQAGRARRVASVCTGAFLLAEAGLLDGRRAVTHWARCDEFAARYPNVRVEPDPIFIRE
GALWTSAGVTAGIDLALALVEEDLGRATALDVARELVVFLKRPGGQAQFSTMLSMQRTADRFGELHAWMAEHLTADLSVP
ALAERVSMSERSFVRHYRAETGRTPARAVEQIRVEAAQRLLGETTWPVKRIAGRCGFGSEETLRRSFVRVLGVSPQGYRE
RFVR
>Mature_323_residues
PAAAPRSILVLAFPRAQLLDVTGPLQVFASVNELALERGQPAPYAPRVVAVEAGPVETSSGLVVMAESLRAAARRPDTLI
VAGGKGVHAASKDARVVRWVRQQAGRARRVASVCTGAFLLAEAGLLDGRRAVTHWARCDEFAARYPNVRVEPDPIFIREG
ALWTSAGVTAGIDLALALVEEDLGRATALDVARELVVFLKRPGGQAQFSTMLSMQRTADRFGELHAWMAEHLTADLSVPA
LAERVSMSERSFVRHYRAETGRTPARAVEQIRVEAAQRLLGETTWPVKRIAGRCGFGSEETLRRSFVRVLGVSPQGYRER
FVR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C56 family [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=144, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 35283; Mature: 35152

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAAAPRSILVLAFPRAQLLDVTGPLQVFASVNELALERGQPAPYAPRVVAVEAGPVETS
CCCCCCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
SGLVVMAESLRAAARRPDTLIVAGGKGVHAASKDARVVRWVRQQAGRARRVASVCTGAFL
CCCEEEHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAEAGLLDGRRAVTHWARCDEFAARYPNVRVEPDPIFIREGALWTSAGVTAGIDLALALV
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEECCCEEECCCCHHHHHHHHHHH
EEDLGRATALDVARELVVFLKRPGGQAQFSTMLSMQRTADRFGELHAWMAEHLTADLSVP
HHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ALAERVSMSERSFVRHYRAETGRTPARAVEQIRVEAAQRLLGETTWPVKRIAGRCGFGSE
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCH
ETLRRSFVRVLGVSPQGYRERFVR
HHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure 
PAAAPRSILVLAFPRAQLLDVTGPLQVFASVNELALERGQPAPYAPRVVAVEAGPVETS
CCCCCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
SGLVVMAESLRAAARRPDTLIVAGGKGVHAASKDARVVRWVRQQAGRARRVASVCTGAFL
CCCEEEHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAEAGLLDGRRAVTHWARCDEFAARYPNVRVEPDPIFIREGALWTSAGVTAGIDLALALV
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEECCCEEECCCCHHHHHHHHHHH
EEDLGRATALDVARELVVFLKRPGGQAQFSTMLSMQRTADRFGELHAWMAEHLTADLSVP
HHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ALAERVSMSERSFVRHYRAETGRTPARAVEQIRVEAAQRLLGETTWPVKRIAGRCGFGSE
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCH
ETLRRSFVRVLGVSPQGYRERFVR
HHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8157602 [H]