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The map label for this gene is yhjC [H]

Identifier: 116690676

GI number: 116690676

Start: 2943843

End: 2944817

Strand: Reverse

Name: yhjC [H]

Synonym: Bcen2424_2656

Alternate gene names: 116690676

Gene position: 2944817-2943843 (Counterclockwise)

Preceding gene: 116690677

Following gene: 116690672

Centisome position: 84.53

GC content: 66.97

Gene sequence:

>975_bases
ATGGACCGCATCCAGGCAATGGAGGTTTTTACCCGCGTGGTCGACGCGAACAGCTTCACGCGGGCGGCCGACACGCTCGC
GATGCCGCGCGCATCGGTGACGACCATCATCCAGAATCTCGAGGCGCTGCTCGGCGTGCGCCTGATGCACCGGACGACGC
GCCGGTTGTCGCTGACGCCGGAGGGCGCCGCGTACTACGAGCATTGCATGAAGATCATCGCGGAGATCGCCGAGGCCGAC
GCGAGTTTCCAGGCCGGCAACCGCAAGCCGAGCGGCGTGCTGCGCGTCCACATGCCGAGTTCGCTCGGGCGGCGCGTCGT
GCTGCCGTCGCTGTCGATCTTCCGGCAGCGCTATCCGGACATCACGCTCGAGCTGGGGCTGTCCGACCGCTACGTCGATC
CGGTCGAGGAGGGCATCGACTGCATGATCCGGGTCGGGCCGCTCGAGGATTCGTCGATGGTCGCGCGGCGCATCGGGATG
CTCAAGCGCGTGACGTGCGCGTCTCCCGATTACCTCGCCCGTCACGGCGAGCCGAACGAGATTGCCGATCTCGTCGAGCA
TCACGCGGTGAATTTTCGCTCGAGCCACGGCGCGCGGGCGATTCCGTGGGTGTTCATGATCGACGGCAAGCCGTTCGAGG
TGCGGATGAACGGCAGCGTCACGGTCAACGACTCGGATGCCTACGTGACGTGCGGGCTCGAAGGCTTCGGGATGATCCAG
CCGACGCTGTTCATGGTGCTGCCGCACCTGCTCGACGGCTCGCTGGTCGAGGTGCTGCCGGACAGCAATCCGAAGCCGAA
GCCGATCTCGATCGTCTACCCGCACAACCGGCATCTGTCGCAGAAGGTGCGCGTGTTCGCCGACTGGATCGCGGAGGTGT
TCGAGTCGACGCCGGCGCTGGAGGGCGGGGAGAACTGGCGGGGGAAGCTGCGGGCGGAGACGCCGGATACGCAGCGCGGA
GCGGTGGTGGCGTAG

Upstream 100 bases:

>100_bases
GTCGAAACTATTCAGGATCGGAGAACAATAGGCGGGGGCTTGTGCCGTGCCCGCCGCGCGCTCTATTCTGTCCCGTTGGC
GATTCGAAGGGGGAAGCAGC

Downstream 100 bases:

>100_bases
TCTGGGCGCAGCGCGCGGCCTGAAGGCGGGCAACGCGCGCCGCCGCGTGCGCCCGATGAAGCAATGAAAAAAGCCGCTGT
TTCGAAAGAAACAGCGGCTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYYEHCMKIIAEIAEAD
ASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPDITLELGLSDRYVDPVEEGIDCMIRVGPLEDSSMVARRIGM
LKRVTCASPDYLARHGEPNEIADLVEHHAVNFRSSHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQ
PTLFMVLPHLLDGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWIAEVFESTPALEGGENWRGKLRAETPDTQRG
AVVA

Sequences:

>Translated_324_residues
MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYYEHCMKIIAEIAEAD
ASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPDITLELGLSDRYVDPVEEGIDCMIRVGPLEDSSMVARRIGM
LKRVTCASPDYLARHGEPNEIADLVEHHAVNFRSSHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQ
PTLFMVLPHLLDGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWIAEVFESTPALEGGENWRGKLRAETPDTQRG
AVVA
>Mature_324_residues
MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYYEHCMKIIAEIAEAD
ASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPDITLELGLSDRYVDPVEEGIDCMIRVGPLEDSSMVARRIGM
LKRVTCASPDYLARHGEPNEIADLVEHHAVNFRSSHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQ
PTLFMVLPHLLDGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWIAEVFESTPALEGGENWRGKLRAETPDTQRG
AVVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=40.8783783783784, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=32.8813559322034, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1789639, Length=311, Percent_Identity=29.903536977492, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=28.7671232876712, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=31.4487632508834, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=28.4210526315789, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=29.5138888888889, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1789173, Length=143, Percent_Identity=34.2657342657343, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=22.8373702422145, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=23.469387755102, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788706, Length=297, Percent_Identity=21.8855218855219, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787806, Length=156, Percent_Identity=32.0512820512821, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35988; Mature: 35988

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
EGAAYYEHCMKIIAEIAEADASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPD
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHCCCEEECCCHHHHHHHCCC
ITLELGLSDRYVDPVEEGIDCMIRVGPLEDSSMVARRIGMLKRVTCASPDYLARHGEPNE
EEEEECCCCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHH
IADLVEHHAVNFRSSHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQ
HHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCEEEECCCCCEEEECCCCCCCHH
PTLFMVLPHLLDGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWIAEVFESTPAL
HHHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
EGGENWRGKLRAETPDTQRGAVVA
CCCCCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure
MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
EGAAYYEHCMKIIAEIAEADASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPD
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHCCCEEECCCHHHHHHHCCC
ITLELGLSDRYVDPVEEGIDCMIRVGPLEDSSMVARRIGMLKRVTCASPDYLARHGEPNE
EEEEECCCCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHH
IADLVEHHAVNFRSSHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQ
HHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCEEEECCCCCEEEECCCCCCCHH
PTLFMVLPHLLDGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWIAEVFESTPAL
HHHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
EGGENWRGKLRAETPDTQRGAVVA
CCCCCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]