| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690662
Identifier: 116690662
GI number: 116690662
Start: 2927277
End: 2928626
Strand: Direct
Name: 116690662
Synonym: Bcen2424_2642
Alternate gene names: NA
Gene position: 2927277-2928626 (Clockwise)
Preceding gene: 116690661
Following gene: 116690663
Centisome position: 84.02
GC content: 62.07
Gene sequence:
>1350_bases ATGCCCTCTTCTCCATTGACTTCAGCCAACCCGATGCGCAACCACTCCCGCCTAAAGCGGCTGGCCGCCATCGCGATCGG CAGCATCGCATTGATACTGCTGGTCGAAAATACCGGCTCTCGATGGGAAACCGTTTCGTCGAAGGTGACGTGGCCCGTCC CACTGGCTGGCGTCGGTGATTTCTACGTCGTCGGCAACGAAATCATGTCGCTCACGGTCGCCGACCCTGTGGTGATGCTG AAGCCTCCCGGCGAGTGGAAGAATCCAATGGTCGCCGAACCCACCGAAGCGTGGATGAACAACGCAGCAGAAACCCTCAA TCGGCGGACCGTAAATTTCTTCCGTGGCACCCTCGATCAGGGACTGCAGCGCTTCTTGCAAGCGCCGGGCCAACACACGG CGTGGTGGCATTCGCGGGACGGTCAGGTCCAGGTCATCGGCGTCGGCCGGACCAGCTACACGGCGCCACATCCGGCAGAC GGCCTCGTCTCGCAGCAAACCCGTGTCTGGAAATCGCTCGACGGCGGCCGGCACTGGTCGCAGCTCGACTGGCCCGAGCA CGAGGATATCGATCAGTTGCTCTTCATCGACGCGCGGAGCGGTTATGCGATCGGTCGGGGCCCGGCGGTCCGGCGAACAT CCGACGGCGGCGTGTCCTGGCAGCGGATCGCACTACCACCGGATGCAGCCGTCGGCGGTGCTCCCGGGCGCAGCTTCGCA GGAGTAAATCTTGGCCCCGACGGCACCCTGCGAGTGGCTTACCCTGTCGACCGGTCGGCTACGGCCCCTGCCCGCAGCGT CGTATACCGACTCGCGCCAAATCAGCGGGCGTTCGCTCTCGATACCGTCCTGCCTAACCAGACCGTCACTCGACTCGTGT CTGCGCCTGCCACGGCTGGCGGCTACGCGCTTTACACGCTGTCTCTCCTCGACCATGAGAGTGGCGACGATACTGCACCG GATCGCGCACGCCGGACCGGTGTGCTTTCGACGTGGGCGAACACGCGCCCGGAGCGAGTCCGGCAAGTGACGACGTTTGA CAGGAAGCTCATCCTGAGCGGCCTCGACGTGGGCCGCGATGGCCTGTTGCTCGTCTATGCGACCGACCCCGGGCACGCAA TCGATGATCCACCGATCCCCCTGATGATCAGCAGCACTGACGCAGGCAAGACCTGGAAGCAGAATGTCGACGGGATCGTC TATCACAATCGGTATTTCAATCAGGATACGAACACGCTGTACTCGTTGCTCGATGAAAGACTGAGGAAACTGTCGTTCCC GGTCCGAAATAACCGTGCCTTACAAGACCGAATCCCGTTGCTACGACGGAAGACTCAATTCGATGAATAA
Upstream 100 bases:
>100_bases GCCTACACACTTCGGAAACGGCAATTCTGATCGCTGCCAGACGCATTTGCCGTGGGCCGAGTCCGCAGAATCGGACGACG CCCCCGGCACGATCGGCCTC
Downstream 100 bases:
>100_bases ATCACCGCGTCGCGCCGCACTCGCGCTATGCGTTGCCACATCGCCCGCCGCCTTCGCCGCCAGCCCCTGCCCCGCCGCCG ACACCGCTGCACGCGCCGCG
Product: BNR repeat-containing glycosyl hydrolase
Products: NA
Alternate protein names: Glycosyl Hydrolase
Number of amino acids: Translated: 449; Mature: 448
Protein sequence:
>449_residues MPSSPLTSANPMRNHSRLKRLAAIAIGSIALILLVENTGSRWETVSSKVTWPVPLAGVGDFYVVGNEIMSLTVADPVVML KPPGEWKNPMVAEPTEAWMNNAAETLNRRTVNFFRGTLDQGLQRFLQAPGQHTAWWHSRDGQVQVIGVGRTSYTAPHPAD GLVSQQTRVWKSLDGGRHWSQLDWPEHEDIDQLLFIDARSGYAIGRGPAVRRTSDGGVSWQRIALPPDAAVGGAPGRSFA GVNLGPDGTLRVAYPVDRSATAPARSVVYRLAPNQRAFALDTVLPNQTVTRLVSAPATAGGYALYTLSLLDHESGDDTAP DRARRTGVLSTWANTRPERVRQVTTFDRKLILSGLDVGRDGLLLVYATDPGHAIDDPPIPLMISSTDAGKTWKQNVDGIV YHNRYFNQDTNTLYSLLDERLRKLSFPVRNNRALQDRIPLLRRKTQFDE
Sequences:
>Translated_449_residues MPSSPLTSANPMRNHSRLKRLAAIAIGSIALILLVENTGSRWETVSSKVTWPVPLAGVGDFYVVGNEIMSLTVADPVVML KPPGEWKNPMVAEPTEAWMNNAAETLNRRTVNFFRGTLDQGLQRFLQAPGQHTAWWHSRDGQVQVIGVGRTSYTAPHPAD GLVSQQTRVWKSLDGGRHWSQLDWPEHEDIDQLLFIDARSGYAIGRGPAVRRTSDGGVSWQRIALPPDAAVGGAPGRSFA GVNLGPDGTLRVAYPVDRSATAPARSVVYRLAPNQRAFALDTVLPNQTVTRLVSAPATAGGYALYTLSLLDHESGDDTAP DRARRTGVLSTWANTRPERVRQVTTFDRKLILSGLDVGRDGLLLVYATDPGHAIDDPPIPLMISSTDAGKTWKQNVDGIV YHNRYFNQDTNTLYSLLDERLRKLSFPVRNNRALQDRIPLLRRKTQFDE >Mature_448_residues PSSPLTSANPMRNHSRLKRLAAIAIGSIALILLVENTGSRWETVSSKVTWPVPLAGVGDFYVVGNEIMSLTVADPVVMLK PPGEWKNPMVAEPTEAWMNNAAETLNRRTVNFFRGTLDQGLQRFLQAPGQHTAWWHSRDGQVQVIGVGRTSYTAPHPADG LVSQQTRVWKSLDGGRHWSQLDWPEHEDIDQLLFIDARSGYAIGRGPAVRRTSDGGVSWQRIALPPDAAVGGAPGRSFAG VNLGPDGTLRVAYPVDRSATAPARSVVYRLAPNQRAFALDTVLPNQTVTRLVSAPATAGGYALYTLSLLDHESGDDTAPD RARRTGVLSTWANTRPERVRQVTTFDRKLILSGLDVGRDGLLLVYATDPGHAIDDPPIPLMISSTDAGKTWKQNVDGIVY HNRYFNQDTNTLYSLLDERLRKLSFPVRNNRALQDRIPLLRRKTQFDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49478; Mature: 49347
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSSPLTSANPMRNHSRLKRLAAIAIGSIALILLVENTGSRWETVSSKVTWPVPLAGVGD CCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHCCCEECCCCCCCCCC FYVVGNEIMSLTVADPVVMLKPPGEWKNPMVAEPTEAWMNNAAETLNRRTVNFFRGTLDQ EEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLQRFLQAPGQHTAWWHSRDGQVQVIGVGRTSYTAPHPADGLVSQQTRVWKSLDGGRHWS HHHHHHHCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC QLDWPEHEDIDQLLFIDARSGYAIGRGPAVRRTSDGGVSWQRIALPPDAAVGGAPGRSFA CCCCCCCCCCCEEEEEECCCCCEECCCCCCEECCCCCCCEEEEECCCCCCCCCCCCCCCC GVNLGPDGTLRVAYPVDRSATAPARSVVYRLAPNQRAFALDTVLPNQTVTRLVSAPATAG CCCCCCCCEEEEEEECCCCCCCCHHHEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCC GYALYTLSLLDHESGDDTAPDRARRTGVLSTWANTRPERVRQVTTFDRKLILSGLDVGRD CEEEEEEEEHCCCCCCCCCCHHHHHCCEEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC GLLLVYATDPGHAIDDPPIPLMISSTDAGKTWKQNVDGIVYHNRYFNQDTNTLYSLLDER CEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHCCCEEEEECEECCCCHHHHHHHHHHH LRKLSFPVRNNRALQDRIPLLRRKTQFDE HHHHCCCCCCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure PSSPLTSANPMRNHSRLKRLAAIAIGSIALILLVENTGSRWETVSSKVTWPVPLAGVGD CCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHCCCEECCCCCCCCCC FYVVGNEIMSLTVADPVVMLKPPGEWKNPMVAEPTEAWMNNAAETLNRRTVNFFRGTLDQ EEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLQRFLQAPGQHTAWWHSRDGQVQVIGVGRTSYTAPHPADGLVSQQTRVWKSLDGGRHWS HHHHHHHCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC QLDWPEHEDIDQLLFIDARSGYAIGRGPAVRRTSDGGVSWQRIALPPDAAVGGAPGRSFA CCCCCCCCCCCEEEEEECCCCCEECCCCCCEECCCCCCCEEEEECCCCCCCCCCCCCCCC GVNLGPDGTLRVAYPVDRSATAPARSVVYRLAPNQRAFALDTVLPNQTVTRLVSAPATAG CCCCCCCCEEEEEEECCCCCCCCHHHEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCC GYALYTLSLLDHESGDDTAPDRARRTGVLSTWANTRPERVRQVTTFDRKLILSGLDVGRD CEEEEEEEEHCCCCCCCCCCHHHHHCCEEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC GLLLVYATDPGHAIDDPPIPLMISSTDAGKTWKQNVDGIVYHNRYFNQDTNTLYSLLDER CEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHCCCEEEEECEECCCCHHHHHHHHHHH LRKLSFPVRNNRALQDRIPLLRRKTQFDE HHHHCCCCCCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA