Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

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The map label for this gene is 116690659

Identifier: 116690659

GI number: 116690659

Start: 2922217

End: 2924904

Strand: Direct

Name: 116690659

Synonym: Bcen2424_2639

Alternate gene names: NA

Gene position: 2922217-2924904 (Clockwise)

Preceding gene: 116690658

Following gene: 116690660

Centisome position: 83.88

GC content: 65.62

Gene sequence:

>2688_bases
ATGAATTCGCAAGCGTTAAGAAGCGCGTTGCTGGCCGGACCGGTTCAGCATGAGCGCCTGATCAAACTGGATACCCCGCT
CGGCCCCGACGTCCTGTTGCCGCAGCGCGTCACGGGACGATCGCGCCTCGGACGCCATTTCGAGTTCACCGTCGATACCG
TGTCGGTATCCGACGACCTCGAACTCAAGAAACTGATCGCGCAGCCGGTGACGCTGTGGATCCAGCAGGCCGACCAATCG
TACGCGCCGCACCACGGCTACGTGCATGCGGCCCGCCGGCTCGGGTCGGACAGCGGCGTCACGCACCATCAGATCGTCTT
TGCGTCGTTCCTGCACTTCCTGAAGTTCCGCCGCGATCAGCGCATCTGGCAGGACCGGTCGGCGGACGACATCATCGCCG
ACGTGCTGAACCAGCATCCGCAGGCCAAGGGCCGCTTCACGTTCAAGCTCTACCAGCCGCTGCCGCCGCGCTCGTTCTGC
ATGCAATACGAGGACGACTGGAATTTCGTCCATCGCCTAATGGAATCGGAAGGCCTGTACGGTTTCTGGGAACAGGACAG
CGACGGCAAGTCGCACCGGCTCGTCATCGTCGATCGCATCGACGCGTTGCCCGCGCTGTCGCCGCGAACCGTGCGCTTTC
ATCACGCGGGCACGGGCGACGAAGCCGACACGCTCGTCCAGTTCAGCGGTACACGCACGCTGCGCAGCGTCGCACGCACC
ACGCGCACGTTCGACTACAAGCAGCCGCCCACCGCGTCGAATCCGAAGGCCACCCATACGCCGACGATCGCGAACCAGGG
CGATCTGCCGCAGCAGCTCGAAGTCTACGAATACACGGGTGCCTACACGTATCCCGAGCAGTCACGCGGCGACCATCTGT
CGAAGATCTGGATGGAAGAGCAGGAATCGCACGCGAAGCGCTTTCACGGTGTCGGCGGTGTGCGGCGCATGGACGCCGGA
CGCGTGTTCGAGTTCGCGGAACACCCCGAACACGACAAGGACGATGCCGGCCAGCGCGAATTCGCCGTGATCGAGACGGC
GTGGGTCATCGTCAACAACCTGCCCGTGGCCGACGAGCCGGCCGTTTTCCCGCACAGCCTGCAGGCCGAGATCGGCAGCA
TCATGCAGGCCACCGATACGGACCGGTCGCGCGTGCGTCATCCCGACGGCAGCGAGGGCTTCTTTCAGATCCGCATCGAG
GCGCAGCGCACGACGGTGCCGTTCCGCAGCCCGTTCGAGCACGCGAAGCCGCCGATGCACCTGCAATCGGCGACCGTCGT
CGCGCCGCAAGGCGAAGAAGTCCATACGGACGAGCTCAACCGCGTCAAGGTCCGCTTTCACTGGGACCGCTTGAACGACG
GCGACGAAAAGGCGTCGTGCTGGCTGCGTGCCACGGCGTCCGATTCGGGCAATGGCTACGGTGCCGTCCACCCGCACCGC
AGCGGCGAGGAAGTGCTGGTCGACTTCCTCGGCGGCGACTGCGATCGTCCGATCATCGTCGGCAAGGTCTACAACGGCGC
GACGAGCCCGCAATGGCACAGCAACGGCATCCTGTCCGGGTACCGCTCCAAGGAATACGCGGGCGCCGGCTACAACCAGC
TGGTGCTCGACGACGCGACCGCGCAGAACCGCGTGCACCTGTACAGCAGCCAGACCAACGCACATCTGCATCTCGGCTAC
CTGATCGACCACACGGGCAACAACCGCGGCAGCTATCTCGGCAGTGGCTTCGACCTGCGCTCGGACGCCTACGGCGCCGT
GCGCGCGAACCGCGGGCTGTACGTCACGACGCATCCCAAGCAGGCGGCCAGCCAGCCGCTCGACGTCGACGAGACCCGGG
AGCAGCTCGTGCGCGCGCAAGGGCTGATCGACGCCATGTCGCAGGTCAGCGCGCAGCATCAGGGCGAGTCGCTCGACCCC
GGCCACACGGCGCTGAAGCAGTTCAGCGACGCGACGCAGAACAGCGTGAGCGGCAACGCGTCGGGCGGCCGGACCGCCGG
CGGCGGAACCGGCAACGCCAACGCGTTCAAGGAGCCCGTGATGCTGTTCGGCAGCCCGGCCGGCATCGGGATGTCCACGC
AGCAGTCCGCGCAATTTTCCGCGGACCAGCACATCAACCTCGTCAGCGGGCAAAGCACGCACGTCGCCGCCGGGAAATCG
CTGATCGCCAGTGTCCTCGACCGGATCAGCCTGTTCGCGCAGAACGCGGGGATGAAGCTGTTCGCCGGCAAGGGCAAGGT
CGAAGTGCAGGCGCAGGCGGACAACATCGAGCTGACCGCGCAGAAGGCGCTGAAGCTGATCGCCGTCACGCAATCGATCG
AAGGCGCCGCGGCGAAGGAGATCCTGCTGACGTCCGGCGGCGCCTATATCCGCATCGCGGACGGCAACATCGAGGTGCAC
GCGCCCGGCAAGATCGACATCAAGGGCGCGCAGCATGCGTTCAGCGGCCCCACCCACCTGTCGCAAACGATGCCGACGCT
GCCGAACTCCAACGGCAACTACGACCAGGCATTCATCGCGCACTGGGCCGGCACCGACATTCCGGTCGCGAACACGCGGT
ACCAGATGTTCTCGAACGGCAAGCTGCTCTCGGAAGGCGTCACCAACGCGGCAGGCGAAACCGGGCTCACGCAGAGCCAC
GTGCCGCACGACGTCGTGGTCAAGTTTCTAGGGAAATCGAATGGCTGA

Upstream 100 bases:

>100_bases
CCGGCCCGCCAATTCGAGATAAAACCGTTTTATCTCATACAATTACCGGATTCCGCACGAGAGAGCGTGCGAACCAGCAC
AACAAAAGCGAGCACTGGTG

Downstream 100 bases:

>100_bases
CGGACAACAGGACAAGGTGCTCGGGACCGGTGCGGGGATGCTGACCCCGACGGGATACCAGGATCGGCCGAAGGTGCAGA
TCAACATCTGCGACAAGCAT

Product: Rhs element Vgr protein

Products: NA

Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; Rhs-Family Protein; Rhs Element Vgr Family; VGR-Like Protein; VGR-Related Type VI Secretion System Protein; Vgr Related Protein; Rhs Element Vgr Related Protein; Replication/Virulence Associated Protein; Conserved Hypothethical Protein; Rhs Element Vgr ProteinGp5-Like; Type VI Secretion System VgrG Family Protein; Rhs Family Protein; VgrG Protein; Rhs Element Vgr-Related Protein; Vgr Protein; VgrG Family T6SS G

Number of amino acids: Translated: 895; Mature: 895

Protein sequence:

>895_residues
MNSQALRSALLAGPVQHERLIKLDTPLGPDVLLPQRVTGRSRLGRHFEFTVDTVSVSDDLELKKLIAQPVTLWIQQADQS
YAPHHGYVHAARRLGSDSGVTHHQIVFASFLHFLKFRRDQRIWQDRSADDIIADVLNQHPQAKGRFTFKLYQPLPPRSFC
MQYEDDWNFVHRLMESEGLYGFWEQDSDGKSHRLVIVDRIDALPALSPRTVRFHHAGTGDEADTLVQFSGTRTLRSVART
TRTFDYKQPPTASNPKATHTPTIANQGDLPQQLEVYEYTGAYTYPEQSRGDHLSKIWMEEQESHAKRFHGVGGVRRMDAG
RVFEFAEHPEHDKDDAGQREFAVIETAWVIVNNLPVADEPAVFPHSLQAEIGSIMQATDTDRSRVRHPDGSEGFFQIRIE
AQRTTVPFRSPFEHAKPPMHLQSATVVAPQGEEVHTDELNRVKVRFHWDRLNDGDEKASCWLRATASDSGNGYGAVHPHR
SGEEVLVDFLGGDCDRPIIVGKVYNGATSPQWHSNGILSGYRSKEYAGAGYNQLVLDDATAQNRVHLYSSQTNAHLHLGY
LIDHTGNNRGSYLGSGFDLRSDAYGAVRANRGLYVTTHPKQAASQPLDVDETREQLVRAQGLIDAMSQVSAQHQGESLDP
GHTALKQFSDATQNSVSGNASGGRTAGGGTGNANAFKEPVMLFGSPAGIGMSTQQSAQFSADQHINLVSGQSTHVAAGKS
LIASVLDRISLFAQNAGMKLFAGKGKVEVQAQADNIELTAQKALKLIAVTQSIEGAAAKEILLTSGGAYIRIADGNIEVH
APGKIDIKGAQHAFSGPTHLSQTMPTLPNSNGNYDQAFIAHWAGTDIPVANTRYQMFSNGKLLSEGVTNAAGETGLTQSH
VPHDVVVKFLGKSNG

Sequences:

>Translated_895_residues
MNSQALRSALLAGPVQHERLIKLDTPLGPDVLLPQRVTGRSRLGRHFEFTVDTVSVSDDLELKKLIAQPVTLWIQQADQS
YAPHHGYVHAARRLGSDSGVTHHQIVFASFLHFLKFRRDQRIWQDRSADDIIADVLNQHPQAKGRFTFKLYQPLPPRSFC
MQYEDDWNFVHRLMESEGLYGFWEQDSDGKSHRLVIVDRIDALPALSPRTVRFHHAGTGDEADTLVQFSGTRTLRSVART
TRTFDYKQPPTASNPKATHTPTIANQGDLPQQLEVYEYTGAYTYPEQSRGDHLSKIWMEEQESHAKRFHGVGGVRRMDAG
RVFEFAEHPEHDKDDAGQREFAVIETAWVIVNNLPVADEPAVFPHSLQAEIGSIMQATDTDRSRVRHPDGSEGFFQIRIE
AQRTTVPFRSPFEHAKPPMHLQSATVVAPQGEEVHTDELNRVKVRFHWDRLNDGDEKASCWLRATASDSGNGYGAVHPHR
SGEEVLVDFLGGDCDRPIIVGKVYNGATSPQWHSNGILSGYRSKEYAGAGYNQLVLDDATAQNRVHLYSSQTNAHLHLGY
LIDHTGNNRGSYLGSGFDLRSDAYGAVRANRGLYVTTHPKQAASQPLDVDETREQLVRAQGLIDAMSQVSAQHQGESLDP
GHTALKQFSDATQNSVSGNASGGRTAGGGTGNANAFKEPVMLFGSPAGIGMSTQQSAQFSADQHINLVSGQSTHVAAGKS
LIASVLDRISLFAQNAGMKLFAGKGKVEVQAQADNIELTAQKALKLIAVTQSIEGAAAKEILLTSGGAYIRIADGNIEVH
APGKIDIKGAQHAFSGPTHLSQTMPTLPNSNGNYDQAFIAHWAGTDIPVANTRYQMFSNGKLLSEGVTNAAGETGLTQSH
VPHDVVVKFLGKSNG
>Mature_895_residues
MNSQALRSALLAGPVQHERLIKLDTPLGPDVLLPQRVTGRSRLGRHFEFTVDTVSVSDDLELKKLIAQPVTLWIQQADQS
YAPHHGYVHAARRLGSDSGVTHHQIVFASFLHFLKFRRDQRIWQDRSADDIIADVLNQHPQAKGRFTFKLYQPLPPRSFC
MQYEDDWNFVHRLMESEGLYGFWEQDSDGKSHRLVIVDRIDALPALSPRTVRFHHAGTGDEADTLVQFSGTRTLRSVART
TRTFDYKQPPTASNPKATHTPTIANQGDLPQQLEVYEYTGAYTYPEQSRGDHLSKIWMEEQESHAKRFHGVGGVRRMDAG
RVFEFAEHPEHDKDDAGQREFAVIETAWVIVNNLPVADEPAVFPHSLQAEIGSIMQATDTDRSRVRHPDGSEGFFQIRIE
AQRTTVPFRSPFEHAKPPMHLQSATVVAPQGEEVHTDELNRVKVRFHWDRLNDGDEKASCWLRATASDSGNGYGAVHPHR
SGEEVLVDFLGGDCDRPIIVGKVYNGATSPQWHSNGILSGYRSKEYAGAGYNQLVLDDATAQNRVHLYSSQTNAHLHLGY
LIDHTGNNRGSYLGSGFDLRSDAYGAVRANRGLYVTTHPKQAASQPLDVDETREQLVRAQGLIDAMSQVSAQHQGESLDP
GHTALKQFSDATQNSVSGNASGGRTAGGGTGNANAFKEPVMLFGSPAGIGMSTQQSAQFSADQHINLVSGQSTHVAAGKS
LIASVLDRISLFAQNAGMKLFAGKGKVEVQAQADNIELTAQKALKLIAVTQSIEGAAAKEILLTSGGAYIRIADGNIEVH
APGKIDIKGAQHAFSGPTHLSQTMPTLPNSNGNYDQAFIAHWAGTDIPVANTRYQMFSNGKLLSEGVTNAAGETGLTQSH
VPHDVVVKFLGKSNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 98094; Mature: 98094

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSQALRSALLAGPVQHERLIKLDTPLGPDVLLPQRVTGRSRLGRHFEFTVDTVSVSDDL
CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCEEEEEEEEEECCCCH
ELKKLIAQPVTLWIQQADQSYAPHHGYVHAARRLGSDSGVTHHQIVFASFLHFLKFRRDQ
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
RIWQDRSADDIIADVLNQHPQAKGRFTFKLYQPLPPRSFCMQYEDDWNFVHRLMESEGLY
HHHHCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHEEECCCHHHHHHHHHCCCCE
GFWEQDSDGKSHRLVIVDRIDALPALSPRTVRFHHAGTGDEADTLVQFSGTRTLRSVART
EEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHH
TRTFDYKQPPTASNPKATHTPTIANQGDLPQQLEVYEYTGAYTYPEQSRGDHLSKIWMEE
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
QESHAKRFHGVGGVRRMDAGRVFEFAEHPEHDKDDAGQREFAVIETAWVIVNNLPVADEP
HHHHHHHHHCCCCCEECCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCC
AVFPHSLQAEIGSIMQATDTDRSRVRHPDGSEGFFQIRIEAQRTTVPFRSPFEHAKPPMH
CCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCE
LQSATVVAPQGEEVHTDELNRVKVRFHWDRLNDGDEKASCWLRATASDSGNGYGAVHPHR
ECCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
SGEEVLVDFLGGDCDRPIIVGKVYNGATSPQWHSNGILSGYRSKEYAGAGYNQLVLDDAT
CCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
AQNRVHLYSSQTNAHLHLGYLIDHTGNNRGSYLGSGFDLRSDAYGAVRANRGLYVTTHPK
CCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCH
QAASQPLDVDETREQLVRAQGLIDAMSQVSAQHQGESLDPGHTALKQFSDATQNSVSGNA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
SGGRTAGGGTGNANAFKEPVMLFGSPAGIGMSTQQSAQFSADQHINLVSGQSTHVAAGKS
CCCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHH
LIASVLDRISLFAQNAGMKLFAGKGKVEVQAQADNIELTAQKALKLIAVTQSIEGAAAKE
HHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCEEEEHHHHHHHHHHHHCCCCHHHHE
ILLTSGGAYIRIADGNIEVHAPGKIDIKGAQHAFSGPTHLSQTMPTLPNSNGNYDQAFIA
EEEECCCCEEEEECCEEEEECCCEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEE
HWAGTDIPVANTRYQMFSNGKLLSEGVTNAAGETGLTQSHVPHDVVVKFLGKSNG
EECCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MNSQALRSALLAGPVQHERLIKLDTPLGPDVLLPQRVTGRSRLGRHFEFTVDTVSVSDDL
CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCEEEEEEEEEECCCCH
ELKKLIAQPVTLWIQQADQSYAPHHGYVHAARRLGSDSGVTHHQIVFASFLHFLKFRRDQ
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
RIWQDRSADDIIADVLNQHPQAKGRFTFKLYQPLPPRSFCMQYEDDWNFVHRLMESEGLY
HHHHCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHEEECCCHHHHHHHHHCCCCE
GFWEQDSDGKSHRLVIVDRIDALPALSPRTVRFHHAGTGDEADTLVQFSGTRTLRSVART
EEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHH
TRTFDYKQPPTASNPKATHTPTIANQGDLPQQLEVYEYTGAYTYPEQSRGDHLSKIWMEE
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
QESHAKRFHGVGGVRRMDAGRVFEFAEHPEHDKDDAGQREFAVIETAWVIVNNLPVADEP
HHHHHHHHHCCCCCEECCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCC
AVFPHSLQAEIGSIMQATDTDRSRVRHPDGSEGFFQIRIEAQRTTVPFRSPFEHAKPPMH
CCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCE
LQSATVVAPQGEEVHTDELNRVKVRFHWDRLNDGDEKASCWLRATASDSGNGYGAVHPHR
ECCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
SGEEVLVDFLGGDCDRPIIVGKVYNGATSPQWHSNGILSGYRSKEYAGAGYNQLVLDDAT
CCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
AQNRVHLYSSQTNAHLHLGYLIDHTGNNRGSYLGSGFDLRSDAYGAVRANRGLYVTTHPK
CCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCH
QAASQPLDVDETREQLVRAQGLIDAMSQVSAQHQGESLDPGHTALKQFSDATQNSVSGNA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
SGGRTAGGGTGNANAFKEPVMLFGSPAGIGMSTQQSAQFSADQHINLVSGQSTHVAAGKS
CCCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHH
LIASVLDRISLFAQNAGMKLFAGKGKVEVQAQADNIELTAQKALKLIAVTQSIEGAAAKE
HHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCEEEEHHHHHHHHHHHHCCCCHHHHE
ILLTSGGAYIRIADGNIEVHAPGKIDIKGAQHAFSGPTHLSQTMPTLPNSNGNYDQAFIA
EEEECCCCEEEEECCEEEEECCCEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEE
HWAGTDIPVANTRYQMFSNGKLLSEGVTNAAGETGLTQSHVPHDVVVKFLGKSNG
EECCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA