| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690659
Identifier: 116690659
GI number: 116690659
Start: 2922217
End: 2924904
Strand: Direct
Name: 116690659
Synonym: Bcen2424_2639
Alternate gene names: NA
Gene position: 2922217-2924904 (Clockwise)
Preceding gene: 116690658
Following gene: 116690660
Centisome position: 83.88
GC content: 65.62
Gene sequence:
>2688_bases ATGAATTCGCAAGCGTTAAGAAGCGCGTTGCTGGCCGGACCGGTTCAGCATGAGCGCCTGATCAAACTGGATACCCCGCT CGGCCCCGACGTCCTGTTGCCGCAGCGCGTCACGGGACGATCGCGCCTCGGACGCCATTTCGAGTTCACCGTCGATACCG TGTCGGTATCCGACGACCTCGAACTCAAGAAACTGATCGCGCAGCCGGTGACGCTGTGGATCCAGCAGGCCGACCAATCG TACGCGCCGCACCACGGCTACGTGCATGCGGCCCGCCGGCTCGGGTCGGACAGCGGCGTCACGCACCATCAGATCGTCTT TGCGTCGTTCCTGCACTTCCTGAAGTTCCGCCGCGATCAGCGCATCTGGCAGGACCGGTCGGCGGACGACATCATCGCCG ACGTGCTGAACCAGCATCCGCAGGCCAAGGGCCGCTTCACGTTCAAGCTCTACCAGCCGCTGCCGCCGCGCTCGTTCTGC ATGCAATACGAGGACGACTGGAATTTCGTCCATCGCCTAATGGAATCGGAAGGCCTGTACGGTTTCTGGGAACAGGACAG CGACGGCAAGTCGCACCGGCTCGTCATCGTCGATCGCATCGACGCGTTGCCCGCGCTGTCGCCGCGAACCGTGCGCTTTC ATCACGCGGGCACGGGCGACGAAGCCGACACGCTCGTCCAGTTCAGCGGTACACGCACGCTGCGCAGCGTCGCACGCACC ACGCGCACGTTCGACTACAAGCAGCCGCCCACCGCGTCGAATCCGAAGGCCACCCATACGCCGACGATCGCGAACCAGGG CGATCTGCCGCAGCAGCTCGAAGTCTACGAATACACGGGTGCCTACACGTATCCCGAGCAGTCACGCGGCGACCATCTGT CGAAGATCTGGATGGAAGAGCAGGAATCGCACGCGAAGCGCTTTCACGGTGTCGGCGGTGTGCGGCGCATGGACGCCGGA CGCGTGTTCGAGTTCGCGGAACACCCCGAACACGACAAGGACGATGCCGGCCAGCGCGAATTCGCCGTGATCGAGACGGC GTGGGTCATCGTCAACAACCTGCCCGTGGCCGACGAGCCGGCCGTTTTCCCGCACAGCCTGCAGGCCGAGATCGGCAGCA TCATGCAGGCCACCGATACGGACCGGTCGCGCGTGCGTCATCCCGACGGCAGCGAGGGCTTCTTTCAGATCCGCATCGAG GCGCAGCGCACGACGGTGCCGTTCCGCAGCCCGTTCGAGCACGCGAAGCCGCCGATGCACCTGCAATCGGCGACCGTCGT CGCGCCGCAAGGCGAAGAAGTCCATACGGACGAGCTCAACCGCGTCAAGGTCCGCTTTCACTGGGACCGCTTGAACGACG GCGACGAAAAGGCGTCGTGCTGGCTGCGTGCCACGGCGTCCGATTCGGGCAATGGCTACGGTGCCGTCCACCCGCACCGC AGCGGCGAGGAAGTGCTGGTCGACTTCCTCGGCGGCGACTGCGATCGTCCGATCATCGTCGGCAAGGTCTACAACGGCGC GACGAGCCCGCAATGGCACAGCAACGGCATCCTGTCCGGGTACCGCTCCAAGGAATACGCGGGCGCCGGCTACAACCAGC TGGTGCTCGACGACGCGACCGCGCAGAACCGCGTGCACCTGTACAGCAGCCAGACCAACGCACATCTGCATCTCGGCTAC CTGATCGACCACACGGGCAACAACCGCGGCAGCTATCTCGGCAGTGGCTTCGACCTGCGCTCGGACGCCTACGGCGCCGT GCGCGCGAACCGCGGGCTGTACGTCACGACGCATCCCAAGCAGGCGGCCAGCCAGCCGCTCGACGTCGACGAGACCCGGG AGCAGCTCGTGCGCGCGCAAGGGCTGATCGACGCCATGTCGCAGGTCAGCGCGCAGCATCAGGGCGAGTCGCTCGACCCC GGCCACACGGCGCTGAAGCAGTTCAGCGACGCGACGCAGAACAGCGTGAGCGGCAACGCGTCGGGCGGCCGGACCGCCGG CGGCGGAACCGGCAACGCCAACGCGTTCAAGGAGCCCGTGATGCTGTTCGGCAGCCCGGCCGGCATCGGGATGTCCACGC AGCAGTCCGCGCAATTTTCCGCGGACCAGCACATCAACCTCGTCAGCGGGCAAAGCACGCACGTCGCCGCCGGGAAATCG CTGATCGCCAGTGTCCTCGACCGGATCAGCCTGTTCGCGCAGAACGCGGGGATGAAGCTGTTCGCCGGCAAGGGCAAGGT CGAAGTGCAGGCGCAGGCGGACAACATCGAGCTGACCGCGCAGAAGGCGCTGAAGCTGATCGCCGTCACGCAATCGATCG AAGGCGCCGCGGCGAAGGAGATCCTGCTGACGTCCGGCGGCGCCTATATCCGCATCGCGGACGGCAACATCGAGGTGCAC GCGCCCGGCAAGATCGACATCAAGGGCGCGCAGCATGCGTTCAGCGGCCCCACCCACCTGTCGCAAACGATGCCGACGCT GCCGAACTCCAACGGCAACTACGACCAGGCATTCATCGCGCACTGGGCCGGCACCGACATTCCGGTCGCGAACACGCGGT ACCAGATGTTCTCGAACGGCAAGCTGCTCTCGGAAGGCGTCACCAACGCGGCAGGCGAAACCGGGCTCACGCAGAGCCAC GTGCCGCACGACGTCGTGGTCAAGTTTCTAGGGAAATCGAATGGCTGA
Upstream 100 bases:
>100_bases CCGGCCCGCCAATTCGAGATAAAACCGTTTTATCTCATACAATTACCGGATTCCGCACGAGAGAGCGTGCGAACCAGCAC AACAAAAGCGAGCACTGGTG
Downstream 100 bases:
>100_bases CGGACAACAGGACAAGGTGCTCGGGACCGGTGCGGGGATGCTGACCCCGACGGGATACCAGGATCGGCCGAAGGTGCAGA TCAACATCTGCGACAAGCAT
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; Rhs-Family Protein; Rhs Element Vgr Family; VGR-Like Protein; VGR-Related Type VI Secretion System Protein; Vgr Related Protein; Rhs Element Vgr Related Protein; Replication/Virulence Associated Protein; Conserved Hypothethical Protein; Rhs Element Vgr ProteinGp5-Like; Type VI Secretion System VgrG Family Protein; Rhs Family Protein; VgrG Protein; Rhs Element Vgr-Related Protein; Vgr Protein; VgrG Family T6SS G
Number of amino acids: Translated: 895; Mature: 895
Protein sequence:
>895_residues MNSQALRSALLAGPVQHERLIKLDTPLGPDVLLPQRVTGRSRLGRHFEFTVDTVSVSDDLELKKLIAQPVTLWIQQADQS YAPHHGYVHAARRLGSDSGVTHHQIVFASFLHFLKFRRDQRIWQDRSADDIIADVLNQHPQAKGRFTFKLYQPLPPRSFC MQYEDDWNFVHRLMESEGLYGFWEQDSDGKSHRLVIVDRIDALPALSPRTVRFHHAGTGDEADTLVQFSGTRTLRSVART TRTFDYKQPPTASNPKATHTPTIANQGDLPQQLEVYEYTGAYTYPEQSRGDHLSKIWMEEQESHAKRFHGVGGVRRMDAG RVFEFAEHPEHDKDDAGQREFAVIETAWVIVNNLPVADEPAVFPHSLQAEIGSIMQATDTDRSRVRHPDGSEGFFQIRIE AQRTTVPFRSPFEHAKPPMHLQSATVVAPQGEEVHTDELNRVKVRFHWDRLNDGDEKASCWLRATASDSGNGYGAVHPHR SGEEVLVDFLGGDCDRPIIVGKVYNGATSPQWHSNGILSGYRSKEYAGAGYNQLVLDDATAQNRVHLYSSQTNAHLHLGY LIDHTGNNRGSYLGSGFDLRSDAYGAVRANRGLYVTTHPKQAASQPLDVDETREQLVRAQGLIDAMSQVSAQHQGESLDP GHTALKQFSDATQNSVSGNASGGRTAGGGTGNANAFKEPVMLFGSPAGIGMSTQQSAQFSADQHINLVSGQSTHVAAGKS LIASVLDRISLFAQNAGMKLFAGKGKVEVQAQADNIELTAQKALKLIAVTQSIEGAAAKEILLTSGGAYIRIADGNIEVH APGKIDIKGAQHAFSGPTHLSQTMPTLPNSNGNYDQAFIAHWAGTDIPVANTRYQMFSNGKLLSEGVTNAAGETGLTQSH VPHDVVVKFLGKSNG
Sequences:
>Translated_895_residues MNSQALRSALLAGPVQHERLIKLDTPLGPDVLLPQRVTGRSRLGRHFEFTVDTVSVSDDLELKKLIAQPVTLWIQQADQS YAPHHGYVHAARRLGSDSGVTHHQIVFASFLHFLKFRRDQRIWQDRSADDIIADVLNQHPQAKGRFTFKLYQPLPPRSFC MQYEDDWNFVHRLMESEGLYGFWEQDSDGKSHRLVIVDRIDALPALSPRTVRFHHAGTGDEADTLVQFSGTRTLRSVART TRTFDYKQPPTASNPKATHTPTIANQGDLPQQLEVYEYTGAYTYPEQSRGDHLSKIWMEEQESHAKRFHGVGGVRRMDAG RVFEFAEHPEHDKDDAGQREFAVIETAWVIVNNLPVADEPAVFPHSLQAEIGSIMQATDTDRSRVRHPDGSEGFFQIRIE AQRTTVPFRSPFEHAKPPMHLQSATVVAPQGEEVHTDELNRVKVRFHWDRLNDGDEKASCWLRATASDSGNGYGAVHPHR SGEEVLVDFLGGDCDRPIIVGKVYNGATSPQWHSNGILSGYRSKEYAGAGYNQLVLDDATAQNRVHLYSSQTNAHLHLGY LIDHTGNNRGSYLGSGFDLRSDAYGAVRANRGLYVTTHPKQAASQPLDVDETREQLVRAQGLIDAMSQVSAQHQGESLDP GHTALKQFSDATQNSVSGNASGGRTAGGGTGNANAFKEPVMLFGSPAGIGMSTQQSAQFSADQHINLVSGQSTHVAAGKS LIASVLDRISLFAQNAGMKLFAGKGKVEVQAQADNIELTAQKALKLIAVTQSIEGAAAKEILLTSGGAYIRIADGNIEVH APGKIDIKGAQHAFSGPTHLSQTMPTLPNSNGNYDQAFIAHWAGTDIPVANTRYQMFSNGKLLSEGVTNAAGETGLTQSH VPHDVVVKFLGKSNG >Mature_895_residues MNSQALRSALLAGPVQHERLIKLDTPLGPDVLLPQRVTGRSRLGRHFEFTVDTVSVSDDLELKKLIAQPVTLWIQQADQS YAPHHGYVHAARRLGSDSGVTHHQIVFASFLHFLKFRRDQRIWQDRSADDIIADVLNQHPQAKGRFTFKLYQPLPPRSFC MQYEDDWNFVHRLMESEGLYGFWEQDSDGKSHRLVIVDRIDALPALSPRTVRFHHAGTGDEADTLVQFSGTRTLRSVART TRTFDYKQPPTASNPKATHTPTIANQGDLPQQLEVYEYTGAYTYPEQSRGDHLSKIWMEEQESHAKRFHGVGGVRRMDAG RVFEFAEHPEHDKDDAGQREFAVIETAWVIVNNLPVADEPAVFPHSLQAEIGSIMQATDTDRSRVRHPDGSEGFFQIRIE AQRTTVPFRSPFEHAKPPMHLQSATVVAPQGEEVHTDELNRVKVRFHWDRLNDGDEKASCWLRATASDSGNGYGAVHPHR SGEEVLVDFLGGDCDRPIIVGKVYNGATSPQWHSNGILSGYRSKEYAGAGYNQLVLDDATAQNRVHLYSSQTNAHLHLGY LIDHTGNNRGSYLGSGFDLRSDAYGAVRANRGLYVTTHPKQAASQPLDVDETREQLVRAQGLIDAMSQVSAQHQGESLDP GHTALKQFSDATQNSVSGNASGGRTAGGGTGNANAFKEPVMLFGSPAGIGMSTQQSAQFSADQHINLVSGQSTHVAAGKS LIASVLDRISLFAQNAGMKLFAGKGKVEVQAQADNIELTAQKALKLIAVTQSIEGAAAKEILLTSGGAYIRIADGNIEVH APGKIDIKGAQHAFSGPTHLSQTMPTLPNSNGNYDQAFIAHWAGTDIPVANTRYQMFSNGKLLSEGVTNAAGETGLTQSH VPHDVVVKFLGKSNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98094; Mature: 98094
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSQALRSALLAGPVQHERLIKLDTPLGPDVLLPQRVTGRSRLGRHFEFTVDTVSVSDDL CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCEEEEEEEEEECCCCH ELKKLIAQPVTLWIQQADQSYAPHHGYVHAARRLGSDSGVTHHQIVFASFLHFLKFRRDQ HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH RIWQDRSADDIIADVLNQHPQAKGRFTFKLYQPLPPRSFCMQYEDDWNFVHRLMESEGLY HHHHCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHEEECCCHHHHHHHHHCCCCE GFWEQDSDGKSHRLVIVDRIDALPALSPRTVRFHHAGTGDEADTLVQFSGTRTLRSVART EEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHH TRTFDYKQPPTASNPKATHTPTIANQGDLPQQLEVYEYTGAYTYPEQSRGDHLSKIWMEE HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH QESHAKRFHGVGGVRRMDAGRVFEFAEHPEHDKDDAGQREFAVIETAWVIVNNLPVADEP HHHHHHHHHCCCCCEECCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCC AVFPHSLQAEIGSIMQATDTDRSRVRHPDGSEGFFQIRIEAQRTTVPFRSPFEHAKPPMH CCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCE LQSATVVAPQGEEVHTDELNRVKVRFHWDRLNDGDEKASCWLRATASDSGNGYGAVHPHR ECCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC SGEEVLVDFLGGDCDRPIIVGKVYNGATSPQWHSNGILSGYRSKEYAGAGYNQLVLDDAT CCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC AQNRVHLYSSQTNAHLHLGYLIDHTGNNRGSYLGSGFDLRSDAYGAVRANRGLYVTTHPK CCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCH QAASQPLDVDETREQLVRAQGLIDAMSQVSAQHQGESLDPGHTALKQFSDATQNSVSGNA HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC SGGRTAGGGTGNANAFKEPVMLFGSPAGIGMSTQQSAQFSADQHINLVSGQSTHVAAGKS CCCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHH LIASVLDRISLFAQNAGMKLFAGKGKVEVQAQADNIELTAQKALKLIAVTQSIEGAAAKE HHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCEEEEHHHHHHHHHHHHCCCCHHHHE ILLTSGGAYIRIADGNIEVHAPGKIDIKGAQHAFSGPTHLSQTMPTLPNSNGNYDQAFIA EEEECCCCEEEEECCEEEEECCCEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEE HWAGTDIPVANTRYQMFSNGKLLSEGVTNAAGETGLTQSHVPHDVVVKFLGKSNG EECCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC >Mature Secondary Structure MNSQALRSALLAGPVQHERLIKLDTPLGPDVLLPQRVTGRSRLGRHFEFTVDTVSVSDDL CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCEEEEEEEEEECCCCH ELKKLIAQPVTLWIQQADQSYAPHHGYVHAARRLGSDSGVTHHQIVFASFLHFLKFRRDQ HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH RIWQDRSADDIIADVLNQHPQAKGRFTFKLYQPLPPRSFCMQYEDDWNFVHRLMESEGLY HHHHCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHEEECCCHHHHHHHHHCCCCE GFWEQDSDGKSHRLVIVDRIDALPALSPRTVRFHHAGTGDEADTLVQFSGTRTLRSVART EEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHH TRTFDYKQPPTASNPKATHTPTIANQGDLPQQLEVYEYTGAYTYPEQSRGDHLSKIWMEE HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH QESHAKRFHGVGGVRRMDAGRVFEFAEHPEHDKDDAGQREFAVIETAWVIVNNLPVADEP HHHHHHHHHCCCCCEECCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCC AVFPHSLQAEIGSIMQATDTDRSRVRHPDGSEGFFQIRIEAQRTTVPFRSPFEHAKPPMH CCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCE LQSATVVAPQGEEVHTDELNRVKVRFHWDRLNDGDEKASCWLRATASDSGNGYGAVHPHR ECCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC SGEEVLVDFLGGDCDRPIIVGKVYNGATSPQWHSNGILSGYRSKEYAGAGYNQLVLDDAT CCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC AQNRVHLYSSQTNAHLHLGYLIDHTGNNRGSYLGSGFDLRSDAYGAVRANRGLYVTTHPK CCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCH QAASQPLDVDETREQLVRAQGLIDAMSQVSAQHQGESLDPGHTALKQFSDATQNSVSGNA HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC SGGRTAGGGTGNANAFKEPVMLFGSPAGIGMSTQQSAQFSADQHINLVSGQSTHVAAGKS CCCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHH LIASVLDRISLFAQNAGMKLFAGKGKVEVQAQADNIELTAQKALKLIAVTQSIEGAAAKE HHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCEEEEHHHHHHHHHHHHCCCCHHHHE ILLTSGGAYIRIADGNIEVHAPGKIDIKGAQHAFSGPTHLSQTMPTLPNSNGNYDQAFIA EEEECCCCEEEEECCEEEEECCCEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEE HWAGTDIPVANTRYQMFSNGKLLSEGVTNAAGETGLTQSHVPHDVVVKFLGKSNG EECCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA