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The map label for this gene is ycjO [C]

Identifier: 116690614

GI number: 116690614

Start: 2871698

End: 2872651

Strand: Reverse

Name: ycjO [C]

Synonym: Bcen2424_2594

Alternate gene names: 116690614

Gene position: 2872651-2871698 (Counterclockwise)

Preceding gene: 116690615

Following gene: 116690613

Centisome position: 82.45

GC content: 66.14

Gene sequence:

>954_bases
ATGCGTCACCTGCGTCTTCCCCTGAGTCACGCTCACGCGCCGTCGGTCGGCGACGCGTCGTCGCCGCCCGGCGCCCCGCG
CCGCGCGCGCGGCGGCGCGAGCTGGCTCGTGTCGCCGTCCGTCGCGGTGCTGCTGCTGTGGATGTCGATTCCGCTCGCGA
TGACGATCTGGTATTCGTTCTCGCGCTACAACCTGCTGAACCCGGACGTGAAGGGCTTCGCCGGGTTCGACAACTACCGC
TTCCTCGCGACCGATCCGTCGTTCCTGCCGGCGATCTGGCACACGCTGGTGCTGATCGGCGCGGTGCTCGCGATCACCGT
GATCGGCGGCGTGCTGATGGCCGTGCTGTTCGACCGCAAGTTCTACGGGCAGGGCGTCGCGCGGCTGCTCGCGATCGCGC
CGTTCTTCGTGATGCCGACCGTCTCCGCGCTGATCTGGAAGAACATGATCCTGCATCCGGTGTACGGGCTCGTCGCGAAC
GCGATGCGCGCGCTCGGGATGACGCCGATCGACTGGTTCGCCGATTACCCGTTGACCGCCGTGATCATCATCGTCGCGTG
GCAGTGGCTGCCGTTCGCGTTCCTGATCCTGTTCACCGCGATCCAGTCGCTCGACCAGGAGCAGAAGGAGGCCGCGCGCA
TCGACGGCGCCGGCCCGATCGCGATGTTCTTCTACATCACGCTGCCGCACCTGAAGCGCGCGATCGCCGTGGTCGTGATG
ATGGAGACGATCTTCCTGCTGTCGATCTTCGCGGAAATCTATACGACGACCGGCGGCGGCCCGGGCGACGCGACGACCAA
CCTGTCGTACCTGATCTATGCGCTCGGCCTGCAGCAGTTCGACGTCGGCCTCGCATCCGCGGGCGGCATCATCGCCGTCG
TGGTCGCGAACGTCGTGTCGTTCTTCCTCGTGCGGATGCTCGCGCGCAACCTGAAGGGAGAGTACGAAAAATGA

Upstream 100 bases:

>100_bases
CGCGGCCCGCATCGTGCGCCTTGGTGCACGGCGCGGGCCGGCTAGGCCGACAGGCGGGCAGGCCGTTCGCGCCCGCGCAT
CAACCGGAGGGACTCCGATC

Downstream 100 bases:

>100_bases
GCGACCTGACCTTGGCAGGCCGGCGCACGCCGGCCGTGTTCGATCTCGTGCGGCGCGCGCTGCCCGGTACGCTCGCGTGG
CTGATCGCGCTCCTGCTGTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRHLRLPLSHAHAPSVGDASSPPGAPRRARGGASWLVSPSVAVLLLWMSIPLAMTIWYSFSRYNLLNPDVKGFAGFDNYR
FLATDPSFLPAIWHTLVLIGAVLAITVIGGVLMAVLFDRKFYGQGVARLLAIAPFFVMPTVSALIWKNMILHPVYGLVAN
AMRALGMTPIDWFADYPLTAVIIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVM
METIFLLSIFAEIYTTTGGGPGDATTNLSYLIYALGLQQFDVGLASAGGIIAVVVANVVSFFLVRMLARNLKGEYEK

Sequences:

>Translated_317_residues
MRHLRLPLSHAHAPSVGDASSPPGAPRRARGGASWLVSPSVAVLLLWMSIPLAMTIWYSFSRYNLLNPDVKGFAGFDNYR
FLATDPSFLPAIWHTLVLIGAVLAITVIGGVLMAVLFDRKFYGQGVARLLAIAPFFVMPTVSALIWKNMILHPVYGLVAN
AMRALGMTPIDWFADYPLTAVIIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVM
METIFLLSIFAEIYTTTGGGPGDATTNLSYLIYALGLQQFDVGLASAGGIIAVVVANVVSFFLVRMLARNLKGEYEK
>Mature_317_residues
MRHLRLPLSHAHAPSVGDASSPPGAPRRARGGASWLVSPSVAVLLLWMSIPLAMTIWYSFSRYNLLNPDVKGFAGFDNYR
FLATDPSFLPAIWHTLVLIGAVLAITVIGGVLMAVLFDRKFYGQGVARLLAIAPFFVMPTVSALIWKNMILHPVYGLVAN
AMRALGMTPIDWFADYPLTAVIIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVM
METIFLLSIFAEIYTTTGGGPGDATTNLSYLIYALGLQQFDVGLASAGGIIAVVVANVVSFFLVRMLARNLKGEYEK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=276, Percent_Identity=29.3478260869565, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1789861, Length=290, Percent_Identity=28.2758620689655, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790465, Length=242, Percent_Identity=29.7520661157025, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34665; Mature: 34665

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHLRLPLSHAHAPSVGDASSPPGAPRRARGGASWLVSPSVAVLLLWMSIPLAMTIWYSF
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHH
SRYNLLNPDVKGFAGFDNYRFLATDPSFLPAIWHTLVLIGAVLAITVIGGVLMAVLFDRK
HHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYGQGVARLLAIAPFFVMPTVSALIWKNMILHPVYGLVANAMRALGMTPIDWFADYPLTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHH
VIIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
METIFLLSIFAEIYTTTGGGPGDATTNLSYLIYALGLQQFDVGLASAGGIIAVVVANVVS
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHH
FFLVRMLARNLKGEYEK
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRHLRLPLSHAHAPSVGDASSPPGAPRRARGGASWLVSPSVAVLLLWMSIPLAMTIWYSF
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHH
SRYNLLNPDVKGFAGFDNYRFLATDPSFLPAIWHTLVLIGAVLAITVIGGVLMAVLFDRK
HHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYGQGVARLLAIAPFFVMPTVSALIWKNMILHPVYGLVANAMRALGMTPIDWFADYPLTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHH
VIIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
METIFLLSIFAEIYTTTGGGPGDATTNLSYLIYALGLQQFDVGLASAGGIIAVVVANVVS
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHH
FFLVRMLARNLKGEYEK
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]