| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is yjeS [H]
Identifier: 116690581
GI number: 116690581
Start: 2836245
End: 2837393
Strand: Reverse
Name: yjeS [H]
Synonym: Bcen2424_2561
Alternate gene names: 116690581
Gene position: 2837393-2836245 (Counterclockwise)
Preceding gene: 116690584
Following gene: 116690580
Centisome position: 81.44
GC content: 70.5
Gene sequence:
>1149_bases TTGACTGCGCTCGCCGCTCGCATCAGGGCGTGGGGGCGCGAATTGGGTTTCGGGGCGATCGGCATCAGCGATACCGATCT CTCGGATGCCGAAGCGGGCCTCGCCGCCTGGCTGGAAGCCGGATACCACGGCGAAATGGATTATATGGCGAAACATGGGA TGAAACGCGCGCGGCCGGCCGAACTTGTGGCCGGTACGCGACGCGTGATCTCCGTGCGGCTCGCCTATTTGCCGGGCCAA ACGCTCGCGGCCGACGCGCCCGCTGGCGAGCCCGGCGCGCTCGTGCCGCACGACTGGCGCGCGCGCGAACGGGCGCGGCT CGAGGATCCGCAGGCGGCCGTCGTGTCGATCTATGCGCGCGGCCGCGACTATCACAAGGTGCTGCGCAACCGGCTGCAGA CACTCGCGGAGCGCATCGAGCACGAGATCGGCGGGTTCGGCTACCGCGTGTTCACCGATTCGGCGCCCGTGCTCGAGGTC GAACTCGCGCAGAAGGCCGGAGTCGGCTGGCGCGGCAAGCACACGCTGCTGCTGCAGCGCGATGCCGGCTCGCTGTTCTT TCTCGGCGAGATCTACGTCGACCTGCCGCTGCCGACCGACGCGCACACGTTGCCCGACACCGCGCCCGAGACGCCCGGTG CGCACTGCGGCAGCTGCACCCGCTGCATCGACGCGTGCCCGACCGGTGCGATCGTCGAGCCGTATCGCGTCGATGCGCGC CGCTGCATCTCGTACCTGACGATCGAACTGAAAGGCAGCATCCCCGAGCCGCTGCGGCCGATGATCGGCAATCGCGTGTA CGGCTGCGACGACTGCCAGCTCGTGTGCCCGTGGAACAAGTTCGCGCAGGCCGCGCCCGTCGCCGATTTCGACGTGCGGC ACGGCCTCGACCGCGCGACGCTCGTCGAGCTGTTCGCGTGGGACGCGGAGGCATTCGACACGCGGATGCAGGGCAGCGCG ATCCGGCGCATCGGCTACGAAAGCTGGCTGCGCAATCTCGCGGTCGGGCTCGGCAATGCGCTGCGCGCCGGCGCGGACCG GCTCGCGCCGCCCGCGCGCGATGCGATCGTCGCCGCGCTGCGCGCCCGGGCCGACGATCCGTCGCCGGTCGTGCGCGAGC ATGTCGAATGGGCGCTGCGAGCCGCGTGA
Upstream 100 bases:
>100_bases GTAAAATAGTGCGATGAACCGACTACCGGAACGCGCCGCATCCGACAGGCCTTCGACTCGTGACGAAGGCGCGGCGCCGT GCGCGCTCGACGATGCGGCG
Downstream 100 bases:
>100_bases AGGCGGCGTAAAGTGTCGTCGGCGCGTGCGCAGGGCCGCGCGCGCATCCCTCGGTCAGGAGAATTCAATGTTCAACGCTG TCATCGACGCGCCGTTCGGC
Product: putative iron-sulfur cluster binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 382; Mature: 381
Protein sequence:
>382_residues MTALAARIRAWGRELGFGAIGISDTDLSDAEAGLAAWLEAGYHGEMDYMAKHGMKRARPAELVAGTRRVISVRLAYLPGQ TLAADAPAGEPGALVPHDWRARERARLEDPQAAVVSIYARGRDYHKVLRNRLQTLAERIEHEIGGFGYRVFTDSAPVLEV ELAQKAGVGWRGKHTLLLQRDAGSLFFLGEIYVDLPLPTDAHTLPDTAPETPGAHCGSCTRCIDACPTGAIVEPYRVDAR RCISYLTIELKGSIPEPLRPMIGNRVYGCDDCQLVCPWNKFAQAAPVADFDVRHGLDRATLVELFAWDAEAFDTRMQGSA IRRIGYESWLRNLAVGLGNALRAGADRLAPPARDAIVAALRARADDPSPVVREHVEWALRAA
Sequences:
>Translated_382_residues MTALAARIRAWGRELGFGAIGISDTDLSDAEAGLAAWLEAGYHGEMDYMAKHGMKRARPAELVAGTRRVISVRLAYLPGQ TLAADAPAGEPGALVPHDWRARERARLEDPQAAVVSIYARGRDYHKVLRNRLQTLAERIEHEIGGFGYRVFTDSAPVLEV ELAQKAGVGWRGKHTLLLQRDAGSLFFLGEIYVDLPLPTDAHTLPDTAPETPGAHCGSCTRCIDACPTGAIVEPYRVDAR RCISYLTIELKGSIPEPLRPMIGNRVYGCDDCQLVCPWNKFAQAAPVADFDVRHGLDRATLVELFAWDAEAFDTRMQGSA IRRIGYESWLRNLAVGLGNALRAGADRLAPPARDAIVAALRARADDPSPVVREHVEWALRAA >Mature_381_residues TALAARIRAWGRELGFGAIGISDTDLSDAEAGLAAWLEAGYHGEMDYMAKHGMKRARPAELVAGTRRVISVRLAYLPGQT LAADAPAGEPGALVPHDWRARERARLEDPQAAVVSIYARGRDYHKVLRNRLQTLAERIEHEIGGFGYRVFTDSAPVLEVE LAQKAGVGWRGKHTLLLQRDAGSLFFLGEIYVDLPLPTDAHTLPDTAPETPGAHCGSCTRCIDACPTGAIVEPYRVDARR CISYLTIELKGSIPEPLRPMIGNRVYGCDDCQLVCPWNKFAQAAPVADFDVRHGLDRATLVELFAWDAEAFDTRMQGSAI RRIGYESWLRNLAVGLGNALRAGADRLAPPARDAIVAALRARADDPSPVVREHVEWALRAA
Specific function: Unknown
COG id: COG1600
COG function: function code C; Uncharacterized Fe-S protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]
Homologues:
Organism=Escherichia coli, GI1790608, Length=379, Percent_Identity=52.2427440633245, Blast_Score=395, Evalue=1e-111,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004453 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013542 - InterPro: IPR009051 [H]
Pfam domain/function: PF08331 DUF1730 [H]
EC number: NA
Molecular weight: Translated: 41733; Mature: 41602
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALAARIRAWGRELGFGAIGISDTDLSDAEAGLAAWLEAGYHGEMDYMAKHGMKRARPA CCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCH ELVAGTRRVISVRLAYLPGQTLAADAPAGEPGALVPHDWRARERARLEDPQAAVVSIYAR HHHHHHHHHEEEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHC GRDYHKVLRNRLQTLAERIEHEIGGFGYRVFTDSAPVLEVELAQKAGVGWRGKHTLLLQR CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEHHHCCCCCCCCEEEEEEE DAGSLFFLGEIYVDLPLPTDAHTLPDTAPETPGAHCGSCTRCIDACPTGAIVEPYRVDAR CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHH RCISYLTIELKGSIPEPLRPMIGNRVYGCDDCQLVCPWNKFAQAAPVADFDVRHGLDRAT HHHHHEEEEECCCCCCCHHHHHCCCCCCCCCCEEECCCHHHHHHCCCCCCHHHHCCCHHH LVELFAWDAEAFDTRMQGSAIRRIGYESWLRNLAVGLGNALRAGADRLAPPARDAIVAAL HHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCHHHCCCCHHHHHHHHH RARADDPSPVVREHVEWALRAA HHCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure TALAARIRAWGRELGFGAIGISDTDLSDAEAGLAAWLEAGYHGEMDYMAKHGMKRARPA CHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCH ELVAGTRRVISVRLAYLPGQTLAADAPAGEPGALVPHDWRARERARLEDPQAAVVSIYAR HHHHHHHHHEEEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHC GRDYHKVLRNRLQTLAERIEHEIGGFGYRVFTDSAPVLEVELAQKAGVGWRGKHTLLLQR CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEHHHCCCCCCCCEEEEEEE DAGSLFFLGEIYVDLPLPTDAHTLPDTAPETPGAHCGSCTRCIDACPTGAIVEPYRVDAR CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHH RCISYLTIELKGSIPEPLRPMIGNRVYGCDDCQLVCPWNKFAQAAPVADFDVRHGLDRAT HHHHHEEEEECCCCCCCHHHHHCCCCCCCCCCEEECCCHHHHHHCCCCCCHHHHCCCHHH LVELFAWDAEAFDTRMQGSAIRRIGYESWLRNLAVGLGNALRAGADRLAPPARDAIVAAL HHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCHHHCCCCHHHHHHHHH RARADDPSPVVREHVEWALRAA HHCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]