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The map label for this gene is ycaN [H]

Identifier: 116690498

GI number: 116690498

Start: 2750171

End: 2751073

Strand: Reverse

Name: ycaN [H]

Synonym: Bcen2424_2478

Alternate gene names: 116690498

Gene position: 2751073-2750171 (Counterclockwise)

Preceding gene: 116690501

Following gene: 116690495

Centisome position: 78.97

GC content: 67.55

Gene sequence:

>903_bases
ATGGGATTCGACAGCAGGCTGCTCAGCGGTATCGGTGTGCTCTCCGCGGTGATAGAGGCCGGCACCTTCGCGCGGGCGGG
CGAGGCGATGGGGCTGACTCAACCGGCGGTGAGCCGCGCCGTTGCCCGGCTGGAAGAGCGGGTCGGCATCCGGATCTTCA
ACCGGACGGCCCGCGCGATCACGTTGACCGACGAAGGGCGACGCTTTTACGAGGCGGTCGCGCCGCTGCTGGCCGGCATC
GAGGAGGCGGCGCTCGACGCCGGCCAGTCGAAGGCGCGCGTGAGGGGGCGGCTGCGGGTCAACGTGGACGGCACGTTCGG
CCACTACGTGCTGGCGCCGCGGATGGCGGAATTTCTCGACCGCTTTCCCGATCTGTCGGTCGAGATCAGCGTGCGGGACC
GGATGGGCGACCTCGTCGCCGACGGTTTCGACGTGGCCGTGCGCTTCGGTATCCCGGAGCCGTCGTCATATCGGGCGCGA
CTGCTGCTCGAGACGCGTGTGCTGACCTGCGCATCGGCGGCCTACGTCGCGCGTCATGGCGAACCGCGTCATCCGCGCGA
TCTCGCGGACGGGCATCGTTGCGTGCTGATCCGCGATCCGGTGACGGGGCGACCGTACGAATGGGAGTTTCATCGCGGCA
AGGAAGTGGTGCCGGTCGACGTCGCCGGCAGGTTGACCGTCAACGATACGGGCGGGCTGCTCGGCGCTTGCCTGGGCGGT
GTCGGCATCGCGCAACTGCTGGAGCTCTATGCGCGGGAGATCCTCGCCGACGGGCGGTTGGCGCAGTTGTTGCCCGAGTG
GGCCGACGAGACTTTTCCGCTTTATGCGTATCACCACGCGTCGAATCTCGTTTCGGCCAAGGTTAGGGTGTTTCTCGACT
TCGTCCGCGAGTTGATGGCCTGA

Upstream 100 bases:

>100_bases
ATGAATGCCGTTCGATCCGGCGACAGGACAACTGTAGGCTTCCGCGATCAATAAAAATAATGAATAATGATCAGTCGATG
AATGACTGAAAGTATGTCTC

Downstream 100 bases:

>100_bases
GTCTGCCGAGCGAACGGCGGCCGTCGGGTCATTCGGTGCGATGCGGAATGTTGTCCGGGAACGGATAGGGCGCATGCGGG
CCGGGCCAGTCGGGTACGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAITLTDEGRRFYEAVAPLLAGI
EEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLDRFPDLSVEISVRDRMGDLVADGFDVAVRFGIPEPSSYRAR
LLLETRVLTCASAAYVARHGEPRHPRDLADGHRCVLIRDPVTGRPYEWEFHRGKEVVPVDVAGRLTVNDTGGLLGACLGG
VGIAQLLELYAREILADGRLAQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFVRELMA

Sequences:

>Translated_300_residues
MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAITLTDEGRRFYEAVAPLLAGI
EEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLDRFPDLSVEISVRDRMGDLVADGFDVAVRFGIPEPSSYRAR
LLLETRVLTCASAAYVARHGEPRHPRDLADGHRCVLIRDPVTGRPYEWEFHRGKEVVPVDVAGRLTVNDTGGLLGACLGG
VGIAQLLELYAREILADGRLAQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFVRELMA
>Mature_299_residues
GFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAITLTDEGRRFYEAVAPLLAGIE
EAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLDRFPDLSVEISVRDRMGDLVADGFDVAVRFGIPEPSSYRARL
LLETRVLTCASAAYVARHGEPRHPRDLADGHRCVLIRDPVTGRPYEWEFHRGKEVVPVDVAGRLTVNDTGGLLGACLGGV
GIAQLLELYAREILADGRLAQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFVRELMA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=32.4137931034483, Blast_Score=164, Evalue=8e-42,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=30.2405498281787, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=30.5841924398625, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI145693193, Length=283, Percent_Identity=31.095406360424, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=29.8305084745763, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=27.6450511945392, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787589, Length=281, Percent_Identity=24.5551601423488, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=26.3779527559055, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI157672245, Length=175, Percent_Identity=30.2857142857143, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788706, Length=299, Percent_Identity=23.4113712374582, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786448, Length=273, Percent_Identity=24.9084249084249, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788748, Length=145, Percent_Identity=31.7241379310345, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790011, Length=272, Percent_Identity=23.5294117647059, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693105, Length=167, Percent_Identity=25.1497005988024, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788481, Length=157, Percent_Identity=26.7515923566879, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32881; Mature: 32750

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI
CCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCEEE
TLTDEGRRFYEAVAPLLAGIEEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD
EEECCHHHHHHHHHHHHHCHHHHHHCCCCCHHEEEEEEEEEECCCCCCHHHHHHHHHHHH
RFPDLSVEISVRDRMGDLVADGFDVAVRFGIPEPSSYRARLLLETRVLTCASAAYVARHG
HCCCCEEEEEEHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
EPRHPRDLADGHRCVLIRDPVTGRPYEWEFHRGKEVVPVDVAGRLTVNDTGGLLGACLGG
CCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCEEEECCCCHHHHHHHHH
VGIAQLLELYAREILADGRLAQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFVRELMA
HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
GFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI
CCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCEEE
TLTDEGRRFYEAVAPLLAGIEEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD
EEECCHHHHHHHHHHHHHCHHHHHHCCCCCHHEEEEEEEEEECCCCCCHHHHHHHHHHHH
RFPDLSVEISVRDRMGDLVADGFDVAVRFGIPEPSSYRARLLLETRVLTCASAAYVARHG
HCCCCEEEEEEHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
EPRHPRDLADGHRCVLIRDPVTGRPYEWEFHRGKEVVPVDVAGRLTVNDTGGLLGACLGG
CCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCEEEECCCCHHHHHHHHH
VGIAQLLELYAREILADGRLAQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFVRELMA
HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]