| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is hisM [H]
Identifier: 116690426
GI number: 116690426
Start: 2667668
End: 2668381
Strand: Direct
Name: hisM [H]
Synonym: Bcen2424_2406
Alternate gene names: 116690426
Gene position: 2667668-2668381 (Clockwise)
Preceding gene: 116690425
Following gene: 116690427
Centisome position: 76.57
GC content: 64.99
Gene sequence:
>714_bases ATGATCGAACTCATCCAAGAATACTGGCGCAACTATCTGTACACCGACGGCTATCGCATCACCGGTGTCGCGATCACGCT GTGGCTGCTGGTCGTGTCGATCGGCCTCGGCTTCTGCCTGTCGGTGCCGCTCGCCGTCGCGCGCGTGTCGAAGCGGAAGT GGCTGTCGGGCGCCGTATGGCTGTACACGTACGTGTTCCGCGGCACGCCGCTCTACGTGCAGCTGCTGCTCTGCTACACG GGCCTCTACAGCCTGCAGGCCGTGCGCGGCACGCCGATGCTCGATGCGTTTTTCCGCGACGGGATGCACTGCACGCTGCT CGCGTTCACGCTGAACACCTGCGCGTACACCACCGAAATCTTCGCGGGCGCGATCAAGGCGACGTCGTACGGCGAGATCG AAGCCGCGCGCGCGTACGGGATGTCGCCGTTCACGATGTATCGCCGCGTGATCCTGCCGTCGGCGCTGCGCCGCGCGCTG CCGCTGTACAGCAACGAAGTGATCCTGATGCTGCACGCGACGACGGTGGCCTTCACCGCGACCGTGCCCGACATCCTGAA GATCGCGCGCGACGTGAACTCGGCGACCTACATGTCGTTCCACGCGTTCGGCATCGCCGCCCTGCTCTACCTCGTGATCT CGTTCACGCTCGTGTGGCTGTTCCGCCAGGCCGAGCGTCGCTGGCTCGCGTATCTGCGCCCGCAAGGCAAGTAA
Upstream 100 bases:
>100_bases TGATCGCGGGAGCGGTCTACCTCGCCATCACGACGATCTCGAACTTCGTGCTGATGTGGCTCGAAAAGCGCTACTCGACC GGTGTCCGCAAGGCTGACCT
Downstream 100 bases:
>100_bases GTTTTCGCAGGACTATTGATGAACTCCCAGACCCAGAAGCTTTTCGTCGACGATCTCCACAAGCGGTACGGCGACAACGA GGTGCTCAAAGGCGTGTCGC
Product: polar amino acid ABC transporter, inner membrane subunit
Products: ADP; phosphate; L-histidine [Cytoplasm]; ADP; L-ornithine [Cytoplasm]; L-arginine [Cytoplasm]; L-lysine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 237; Mature: 237
Protein sequence:
>237_residues MIELIQEYWRNYLYTDGYRITGVAITLWLLVVSIGLGFCLSVPLAVARVSKRKWLSGAVWLYTYVFRGTPLYVQLLLCYT GLYSLQAVRGTPMLDAFFRDGMHCTLLAFTLNTCAYTTEIFAGAIKATSYGEIEAARAYGMSPFTMYRRVILPSALRRAL PLYSNEVILMLHATTVAFTATVPDILKIARDVNSATYMSFHAFGIAALLYLVISFTLVWLFRQAERRWLAYLRPQGK
Sequences:
>Translated_237_residues MIELIQEYWRNYLYTDGYRITGVAITLWLLVVSIGLGFCLSVPLAVARVSKRKWLSGAVWLYTYVFRGTPLYVQLLLCYT GLYSLQAVRGTPMLDAFFRDGMHCTLLAFTLNTCAYTTEIFAGAIKATSYGEIEAARAYGMSPFTMYRRVILPSALRRAL PLYSNEVILMLHATTVAFTATVPDILKIARDVNSATYMSFHAFGIAALLYLVISFTLVWLFRQAERRWLAYLRPQGK >Mature_237_residues MIELIQEYWRNYLYTDGYRITGVAITLWLLVVSIGLGFCLSVPLAVARVSKRKWLSGAVWLYTYVFRGTPLYVQLLLCYT GLYSLQAVRGTPMLDAFFRDGMHCTLLAFTLNTCAYTTEIFAGAIKATSYGEIEAARAYGMSPFTMYRRVILPSALRRAL PLYSNEVILMLHATTVAFTATVPDILKIARDVNSATYMSFHAFGIAALLYLVISFTLVWLFRQAERRWLAYLRPQGK
Specific function: Part of the binding-protein-dependent transport system for histidine; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4160
COG function: function code E; ABC-type arginine/histidine transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788645, Length=236, Percent_Identity=65.6779661016949, Blast_Score=330, Evalue=5e-92, Organism=Escherichia coli, GI1787086, Length=217, Percent_Identity=33.6405529953917, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1788226, Length=226, Percent_Identity=30.9734513274336, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=29.5238095238095, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1788646, Length=218, Percent_Identity=28.4403669724771, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786873, Length=224, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI48994930, Length=184, Percent_Identity=28.804347826087, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787087, Length=124, Percent_Identity=27.4193548387097, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 26898; Mature: 26898
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIELIQEYWRNYLYTDGYRITGVAITLWLLVVSIGLGFCLSVPLAVARVSKRKWLSGAVW CHHHHHHHHHHCEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LYTYVFRGTPLYVQLLLCYTGLYSLQAVRGTPMLDAFFRDGMHCTLLAFTLNTCAYTTEI HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH FAGAIKATSYGEIEAARAYGMSPFTMYRRVILPSALRRALPLYSNEVILMLHATTVAFTA HHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHH TVPDILKIARDVNSATYMSFHAFGIAALLYLVISFTLVWLFRQAERRWLAYLRPQGK HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MIELIQEYWRNYLYTDGYRITGVAITLWLLVVSIGLGFCLSVPLAVARVSKRKWLSGAVW CHHHHHHHHHHCEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LYTYVFRGTPLYVQLLLCYTGLYSLQAVRGTPMLDAFFRDGMHCTLLAFTLNTCAYTTEI HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH FAGAIKATSYGEIEAARAYGMSPFTMYRRVILPSALRRALPLYSNEVILMLHATTVAFTA HHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHH TVPDILKIARDVNSATYMSFHAFGIAALLYLVISFTLVWLFRQAERRWLAYLRPQGK HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-histidine [Periplasm]; H2O; ATP; L-ornithine [Periplasm]; L-arginine [Periplasm]; L-lysine [Periplasm] [C]
Specific reaction: ATP + L-histidine [Periplasm] + H2O = ADP + phosphate + L-histidine [Cytoplasm] ATP + L-ornithine [Periplasm] + H2O = ADP + phosphate + L-ornithine [Cytoplasm] ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] ATP + L-lysine [P
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]