| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yebQ [H]
Identifier: 116690411
GI number: 116690411
Start: 2652934
End: 2654301
Strand: Direct
Name: yebQ [H]
Synonym: Bcen2424_2391
Alternate gene names: 116690411
Gene position: 2652934-2654301 (Clockwise)
Preceding gene: 116690410
Following gene: 116690415
Centisome position: 76.15
GC content: 70.32
Gene sequence:
>1368_bases ATGAACGCCGATACCGGCCTGCCGCTTCCGCAACGCTACTGGGCGATCGTCTGCGTCGCCCTGGGCATCACGCTCGCCGT GCTCGACGGCGCCATCGCCAACGTCGCCTTGCCGACCATCGCACGCGACCTGCACGCGTCCGACGCCGCGTCGATCTGGA TCGTCAACGCGTACCAGCTCGCAGTCACGATCACGCTGCTGCCGCTCGCGTCGCTCGGCGAACGCATCGGCTATCGCCGC ATCTACATCGCCGGGCTCGCGCTGTTCACCGCGGCGTCGCTCGGCTGCGCGCTGGCCGGCTCACTGCCGATGCTGGCCGT GATGCGCGTGATCCAGGGGTTCGGCGCGGCCGGCATCATGAGCGTCAACGCGGCGCTCGTGCGGATGATCTACCCGTCGT CGTTGCTCGGGCGCGGGCTGTCGATCAACGCGATGGTAGTCGCGCTGTCGTCGGCGATCGGGCCGACGGTCGCATCCGCG ATCCTGTCGTTCGCGTCGTGGCCGTGGCTGTTCGCGGTCAACGTGCCGATCGGCATCGCGGCCGTGCTCGGCAGCGTGCG GGCGCTGCCGGCCAACCCGCTGCACGACGCGCCGTACGACTTCCCGAGCGCGCTGATGAACGCATGCGTGTTCGGCCTGC TGATCACGGCCGTCGACGGGCTCGGTCACGGCGAAGGTCATGCGTACGTCGCGGCCGAACTGGCCGTCGCGTTCGTGGTC GGCTACTTCTTCGTGAAGCGTCAGTTGTCGCAGCCGGCGCCGCTCCTGCCCGTCGACCTGATGCGCATCCCGATGTTCGC GCTGTCGGTCTACACGTCGACGGCGTCGTTCACGTCGCAGATGCTCGCGTTCGTCGCGCTGCCGTTCTGGCTGCAGAATT CGCTCGGTTTCTCGCAGGTCGAGACGGGCCTCTACATGACGCCATGGCCGCTCGTGATCGTGTTCGCCGCGCCGCTCGCG GGCGTGCTGTCGGACCGCTATTCGGCCGGCATTCTCGGCGGGATCGGGCTTGCACTGTTCGCCGCCGGGCTGCTGTCGCT CGCGACGATCGGTGCACACCCGGGCACGGTCGACATCGTGTGGCGGATGGCGCTGTGCGGCGCGGGCTTCGGGCTGTTCC AGTCGCCGAACAACCGCGCGATGCTGTCGTCGGCGCCGCGCGAGCGCAGCGGCGGCGCCGGCGGCATGTTGAGCACCGCG CGCCTGACGGGCCAGACGCTCGGCGCGGCGCTCGTCGCGCTGATTTTCGGGCTCGCGCCCGACCGCGGGCCGACGATCGC GCTCTATGTCGCCACGGTGTTCGCGGCGGTGGCCGCGGTCGTCAGCCTGCTGCGCATCGCGTCGCCGCGGCCGGACACGG CGGCCTGA
Upstream 100 bases:
>100_bases CAGCCGCGCCGGCCGGGCCGTTCATCGCCGCCACCCTTGCACATGGTTGCGCACGCAACCTGCAACCGGGCGCGCGGACA ACCCTGCTCTCGCTCCCGTC
Downstream 100 bases:
>100_bases CACCCGCCGCCGTGCGCCACACCCGCGGCGGGCATCAGGCCGCGTCGAGCGTGTCCATCACGAAGCGCACGCGCGCCTTC ACGCTCACGCGCGGCAACTC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 455; Mature: 455
Protein sequence:
>455_residues MNADTGLPLPQRYWAIVCVALGITLAVLDGAIANVALPTIARDLHASDAASIWIVNAYQLAVTITLLPLASLGERIGYRR IYIAGLALFTAASLGCALAGSLPMLAVMRVIQGFGAAGIMSVNAALVRMIYPSSLLGRGLSINAMVVALSSAIGPTVASA ILSFASWPWLFAVNVPIGIAAVLGSVRALPANPLHDAPYDFPSALMNACVFGLLITAVDGLGHGEGHAYVAAELAVAFVV GYFFVKRQLSQPAPLLPVDLMRIPMFALSVYTSTASFTSQMLAFVALPFWLQNSLGFSQVETGLYMTPWPLVIVFAAPLA GVLSDRYSAGILGGIGLALFAAGLLSLATIGAHPGTVDIVWRMALCGAGFGLFQSPNNRAMLSSAPRERSGGAGGMLSTA RLTGQTLGAALVALIFGLAPDRGPTIALYVATVFAAVAAVVSLLRIASPRPDTAA
Sequences:
>Translated_455_residues MNADTGLPLPQRYWAIVCVALGITLAVLDGAIANVALPTIARDLHASDAASIWIVNAYQLAVTITLLPLASLGERIGYRR IYIAGLALFTAASLGCALAGSLPMLAVMRVIQGFGAAGIMSVNAALVRMIYPSSLLGRGLSINAMVVALSSAIGPTVASA ILSFASWPWLFAVNVPIGIAAVLGSVRALPANPLHDAPYDFPSALMNACVFGLLITAVDGLGHGEGHAYVAAELAVAFVV GYFFVKRQLSQPAPLLPVDLMRIPMFALSVYTSTASFTSQMLAFVALPFWLQNSLGFSQVETGLYMTPWPLVIVFAAPLA GVLSDRYSAGILGGIGLALFAAGLLSLATIGAHPGTVDIVWRMALCGAGFGLFQSPNNRAMLSSAPRERSGGAGGMLSTA RLTGQTLGAALVALIFGLAPDRGPTIALYVATVFAAVAAVVSLLRIASPRPDTAA >Mature_455_residues MNADTGLPLPQRYWAIVCVALGITLAVLDGAIANVALPTIARDLHASDAASIWIVNAYQLAVTITLLPLASLGERIGYRR IYIAGLALFTAASLGCALAGSLPMLAVMRVIQGFGAAGIMSVNAALVRMIYPSSLLGRGLSINAMVVALSSAIGPTVASA ILSFASWPWLFAVNVPIGIAAVLGSVRALPANPLHDAPYDFPSALMNACVFGLLITAVDGLGHGEGHAYVAAELAVAFVV GYFFVKRQLSQPAPLLPVDLMRIPMFALSVYTSTASFTSQMLAFVALPFWLQNSLGFSQVETGLYMTPWPLVIVFAAPLA GVLSDRYSAGILGGIGLALFAAGLLSLATIGAHPGTVDIVWRMALCGAGFGLFQSPNNRAMLSSAPRERSGGAGGMLSTA RLTGQTLGAALVALIFGLAPDRGPTIALYVATVFAAVAAVVSLLRIASPRPDTAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=452, Percent_Identity=59.7345132743363, Blast_Score=512, Evalue=1e-146, Organism=Escherichia coli, GI1790195, Length=292, Percent_Identity=30.4794520547945, Blast_Score=119, Evalue=5e-28, Organism=Escherichia coli, GI1788392, Length=306, Percent_Identity=30.3921568627451, Blast_Score=108, Evalue=7e-25, Organism=Escherichia coli, GI1789042, Length=412, Percent_Identity=24.2718446601942, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1788710, Length=416, Percent_Identity=24.5192307692308, Blast_Score=99, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6325455, Length=157, Percent_Identity=30.5732484076433, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 46964; Mature: 46964
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNADTGLPLPQRYWAIVCVALGITLAVLDGAIANVALPTIARDLHASDAASIWIVNAYQL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHH AVTITLLPLASLGERIGYRRIYIAGLALFTAASLGCALAGSLPMLAVMRVIQGFGAAGIM HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHH SVNAALVRMIYPSSLLGRGLSINAMVVALSSAIGPTVASAILSFASWPWLFAVNVPIGIA HHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH AVLGSVRALPANPLHDAPYDFPSALMNACVFGLLITAVDGLGHGEGHAYVAAELAVAFVV HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH GYFFVKRQLSQPAPLLPVDLMRIPMFALSVYTSTASFTSQMLAFVALPFWLQNSLGFSQV HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH ETGLYMTPWPLVIVFAAPLAGVLSDRYSAGILGGIGLALFAAGLLSLATIGAHPGTVDIV CCCCEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH WRMALCGAGFGLFQSPNNRAMLSSAPRERSGGAGGMLSTARLTGQTLGAALVALIFGLAP HHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC DRGPTIALYVATVFAAVAAVVSLLRIASPRPDTAA CCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MNADTGLPLPQRYWAIVCVALGITLAVLDGAIANVALPTIARDLHASDAASIWIVNAYQL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHH AVTITLLPLASLGERIGYRRIYIAGLALFTAASLGCALAGSLPMLAVMRVIQGFGAAGIM HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHH SVNAALVRMIYPSSLLGRGLSINAMVVALSSAIGPTVASAILSFASWPWLFAVNVPIGIA HHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH AVLGSVRALPANPLHDAPYDFPSALMNACVFGLLITAVDGLGHGEGHAYVAAELAVAFVV HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH GYFFVKRQLSQPAPLLPVDLMRIPMFALSVYTSTASFTSQMLAFVALPFWLQNSLGFSQV HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH ETGLYMTPWPLVIVFAAPLAGVLSDRYSAGILGGIGLALFAAGLLSLATIGAHPGTVDIV CCCCEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH WRMALCGAGFGLFQSPNNRAMLSSAPRERSGGAGGMLSTARLTGQTLGAALVALIFGLAP HHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC DRGPTIALYVATVFAAVAAVVSLLRIASPRPDTAA CCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]