| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690362
Identifier: 116690362
GI number: 116690362
Start: 2604269
End: 2605072
Strand: Direct
Name: 116690362
Synonym: Bcen2424_2342
Alternate gene names: NA
Gene position: 2604269-2605072 (Clockwise)
Preceding gene: 116690361
Following gene: 116690363
Centisome position: 74.75
GC content: 64.55
Gene sequence:
>804_bases ATGGCCGATCACGACAGACTGCATCCACTCCGTCCGTTCCTGAAAAACTGGGTTTGGGAGCACGGTCGAATCGGGACGCG CTATCTGGACTGCGTGGATGGCGAAATCAAGTTCGACGAAGGCAAGAAATCGCATTTCGCCGCCGAGCAATATACCTACG TGCCGCTGGGCAAGAACGCTGAGGACGACACGCCCGCGGAGGGCCCCGCGATCCACGATGCCGGACTTGCCCGCTTTTTG CGGGCGGCTCAGTTGGGCACGCCCGGGGAAGCCGGTTCCGTGGCGGAGGTTCAGCGCGCCGTGCAGGATTGCGTGGAGAT CGGCCTGTTCAGCGCGTATCAACGGGAGGCTCGCCAGGCACGGGCCCGCTACGCGCAGGAACCGATGTTCGAGGACGAGA TCCGCGCGGCGGTCGTCGACGACATCCGGCGAATTTACGTCGGCATGCGAGAACAGCTGGCGCTGTACGATTTCAGTGTG CTCTACGGCTTGCCCACGCCGCTGCTGATCAGCGACACACCGTTCATCGACTGGCGCGTGATAGCCAGTCCGGCACTGCC GTTCGTCTCGCTTCCGCTGGGACCTTACTGCCTGCTGGTAGGCGCGCCGTCGGGCAGAAGTAGCCGAATCGGCCCGGTGG TCTGGAAGGCCGCTGCCGCGCTGGGGCCGTTGAAGGACCACAACCGCCGGATCGAGGAGCACGCACGGCTGTGGCTGGTG GCGACCACCGATGATCAACTCGTGGCGGCACAAAGTCGCATCGTCTCGGCCACGGGCACCAGGCAAGGCGAGGCGAAGCC TTGA
Upstream 100 bases:
>100_bases AGGAGCTGGGCACGCTCGCCCTGTAGCACGGGCCCGTGACGGCGCGGAATGTGCGGCGGTTGGGTTGGCATGGCTCATAC CGGGAAAACTTGGAGGCTCG
Downstream 100 bases:
>100_bases CCGGTAGCGTCGAGTGGCGGCGCGATCGCATCAGGTCCGGTTTGTCCTGTTGCCGCTCCCGCCCCTGCAACCGCTCACCG TGGCCATCACCAACGTCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MADHDRLHPLRPFLKNWVWEHGRIGTRYLDCVDGEIKFDEGKKSHFAAEQYTYVPLGKNAEDDTPAEGPAIHDAGLARFL RAAQLGTPGEAGSVAEVQRAVQDCVEIGLFSAYQREARQARARYAQEPMFEDEIRAAVVDDIRRIYVGMREQLALYDFSV LYGLPTPLLISDTPFIDWRVIASPALPFVSLPLGPYCLLVGAPSGRSSRIGPVVWKAAAALGPLKDHNRRIEEHARLWLV ATTDDQLVAAQSRIVSATGTRQGEAKP
Sequences:
>Translated_267_residues MADHDRLHPLRPFLKNWVWEHGRIGTRYLDCVDGEIKFDEGKKSHFAAEQYTYVPLGKNAEDDTPAEGPAIHDAGLARFL RAAQLGTPGEAGSVAEVQRAVQDCVEIGLFSAYQREARQARARYAQEPMFEDEIRAAVVDDIRRIYVGMREQLALYDFSV LYGLPTPLLISDTPFIDWRVIASPALPFVSLPLGPYCLLVGAPSGRSSRIGPVVWKAAAALGPLKDHNRRIEEHARLWLV ATTDDQLVAAQSRIVSATGTRQGEAKP >Mature_266_residues ADHDRLHPLRPFLKNWVWEHGRIGTRYLDCVDGEIKFDEGKKSHFAAEQYTYVPLGKNAEDDTPAEGPAIHDAGLARFLR AAQLGTPGEAGSVAEVQRAVQDCVEIGLFSAYQREARQARARYAQEPMFEDEIRAAVVDDIRRIYVGMREQLALYDFSVL YGLPTPLLISDTPFIDWRVIASPALPFVSLPLGPYCLLVGAPSGRSSRIGPVVWKAAAALGPLKDHNRRIEEHARLWLVA TTDDQLVAAQSRIVSATGTRQGEAKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29587; Mature: 29456
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADHDRLHPLRPFLKNWVWEHGRIGTRYLDCVDGEIKFDEGKKSHFAAEQYTYVPLGKNA CCCCCCCCHHHHHHHHHHHHCCCCCCHHHEECCCEEEECCCCCHHCCHHCEEEEECCCCC EDDTPAEGPAIHDAGLARFLRAAQLGTPGEAGSVAEVQRAVQDCVEIGLFSAYQREARQA CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RARYAQEPMFEDEIRAAVVDDIRRIYVGMREQLALYDFSVLYGLPTPLLISDTPFIDWRV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEE IASPALPFVSLPLGPYCLLVGAPSGRSSRIGPVVWKAAAALGPLKDHNRRIEEHARLWLV ECCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCEEEEE ATTDDQLVAAQSRIVSATGTRQGEAKP EECCCHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure ADHDRLHPLRPFLKNWVWEHGRIGTRYLDCVDGEIKFDEGKKSHFAAEQYTYVPLGKNA CCCCCCCHHHHHHHHHHHHCCCCCCHHHEECCCEEEECCCCCHHCCHHCEEEEECCCCC EDDTPAEGPAIHDAGLARFLRAAQLGTPGEAGSVAEVQRAVQDCVEIGLFSAYQREARQA CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RARYAQEPMFEDEIRAAVVDDIRRIYVGMREQLALYDFSVLYGLPTPLLISDTPFIDWRV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEE IASPALPFVSLPLGPYCLLVGAPSGRSSRIGPVVWKAAAALGPLKDHNRRIEEHARLWLV ECCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCEEEEE ATTDDQLVAAQSRIVSATGTRQGEAKP EECCCHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA