| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690341
Identifier: 116690341
GI number: 116690341
Start: 2578964
End: 2579509
Strand: Direct
Name: 116690341
Synonym: Bcen2424_2320
Alternate gene names: NA
Gene position: 2578964-2579509 (Clockwise)
Preceding gene: 116690336
Following gene: 116690342
Centisome position: 74.03
GC content: 70.15
Gene sequence:
>546_bases ATGTCCCACCTGTCCGCGGCCGCACGCGCACGCACCGGCCTGCTTCGCCCGTTGCGCGCGCCGCTTTGCGCGTTGACGCT TGCCACGCTTCTCGCCGCCTGCACGATGCCGACCCATCCCGATTCCGCCGCCCCCGCGCCCGACCCGTACAACCCGGCCG CCGTCCAGTTGCTCGACGACACGAGTTGGGAACTCACCAGCTGGGTGAACGCCGACGGCACGCAACGCGCGATCCCGCAC GGCGACAACGGCGAGCCGATCAAGCTCGCACTGTCGACCGAGTCGGGCATCCGGCGCGCGAGCGGGTTCTCGGGCTGCAA TCGCTACATGGGCACCTATGCGGTCAAGAACGGCCTGCTGAGCTTCGGCCCGCTCGCCGGCACGCGGATGGCCTGCCCGA ACACGCTCGGCGGCCAGCTCGAATCCGCGTATCTCGACGCGCTCGCCCACGTCGACAAGACCGGCGTGCAGATGCGCGCG CCCCAGCAATTGCAGATCGTGACCCAGGCCGGCGCAACGCTGACGTTCACGCACCGGAGCCCCTGA
Upstream 100 bases:
>100_bases GGGCTGCGAACGTTTTCGCGCGCGAAGTGTCGGCTCGCCTGCCGCGGGGCGGGTGCGTTACTCTTACGCCTTGATCAGAA TCCGAAGAGGAACGAGGCTC
Downstream 100 bases:
>100_bases TGCACGGCGCGCGCGGAGGCCGACCGACCGCCTTCGCGTGGCGCACGACGCGCATGTGCCGCCCACGTGCGTCGCGCGGC GTGAATCGGAATCACGCCGC
Product: protein of unknown function DUF306, Meta and HslJ
Products: NA
Alternate protein names: Heat Shock Lipoprotein; Meta/HslJ Family; Transmembrane Lipoprotein DUF; Heat Shock Protein
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MSHLSAAARARTGLLRPLRAPLCALTLATLLAACTMPTHPDSAAPAPDPYNPAAVQLLDDTSWELTSWVNADGTQRAIPH GDNGEPIKLALSTESGIRRASGFSGCNRYMGTYAVKNGLLSFGPLAGTRMACPNTLGGQLESAYLDALAHVDKTGVQMRA PQQLQIVTQAGATLTFTHRSP
Sequences:
>Translated_181_residues MSHLSAAARARTGLLRPLRAPLCALTLATLLAACTMPTHPDSAAPAPDPYNPAAVQLLDDTSWELTSWVNADGTQRAIPH GDNGEPIKLALSTESGIRRASGFSGCNRYMGTYAVKNGLLSFGPLAGTRMACPNTLGGQLESAYLDALAHVDKTGVQMRA PQQLQIVTQAGATLTFTHRSP >Mature_180_residues SHLSAAARARTGLLRPLRAPLCALTLATLLAACTMPTHPDSAAPAPDPYNPAAVQLLDDTSWELTSWVNADGTQRAIPHG DNGEPIKLALSTESGIRRASGFSGCNRYMGTYAVKNGLLSFGPLAGTRMACPNTLGGQLESAYLDALAHVDKTGVQMRAP QQLQIVTQAGATLTFTHRSP
Specific function: Unknown
COG id: COG3187
COG function: function code O; Heat shock protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19037; Mature: 18906
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHLSAAARARTGLLRPLRAPLCALTLATLLAACTMPTHPDSAAPAPDPYNPAAVQLLDD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC TSWELTSWVNADGTQRAIPHGDNGEPIKLALSTESGIRRASGFSGCNRYMGTYAVKNGLL CCCCCHHEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCHHHHHHHHHHHHCCCC SFGPLAGTRMACPNTLGGQLESAYLDALAHVDKTGVQMRAPQQLQIVTQAGATLTFTHRS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCHHEEEEECCCCEEEEECCC P C >Mature Secondary Structure SHLSAAARARTGLLRPLRAPLCALTLATLLAACTMPTHPDSAAPAPDPYNPAAVQLLDD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC TSWELTSWVNADGTQRAIPHGDNGEPIKLALSTESGIRRASGFSGCNRYMGTYAVKNGLL CCCCCHHEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCHHHHHHHHHHHHCCCC SFGPLAGTRMACPNTLGGQLESAYLDALAHVDKTGVQMRAPQQLQIVTQAGATLTFTHRS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCHHEEEEECCCCEEEEECCC P C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA