| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690325
Identifier: 116690325
GI number: 116690325
Start: 2558665
End: 2559924
Strand: Direct
Name: 116690325
Synonym: Bcen2424_2304
Alternate gene names: NA
Gene position: 2558665-2559924 (Clockwise)
Preceding gene: 116690324
Following gene: 116690326
Centisome position: 73.44
GC content: 69.68
Gene sequence:
>1260_bases ATGACGATCAAGCATTCCGTCAGCGTGCGCAGTCTCCGGGCCCTCGACTGGCTCAACTTTTTCGTTGCAAACGTTCAAAC CGGGTTCGGTCCGTTCATCGCGTCCTACCTCGCGTCGCACAAGTGGACGCAGGGCGAGATCGGCATGGTATTGTCGATCG GCACGATCAGCGCGATGGTCAGCCAGGTGCCGGGCGGCGCGGCCGTCGATGCGCTGAAGAACAAGAAAGGCGCGGCCGCG TGGGCGATCGCGGCCATCATCCTGTCCGCGGTCCTGCTCGCGTCCAGCCCGACGATCGTGCCGGTGATCGCCGCCGAGGT GTTCCACGGCTTTGCAAGCTGCATGCTGGTGCCGGCGATGGCCGCGATCTCGTTCTCGCTCGTCGGCCGCGCCGACCTCG GCGACCGGCTCGGCCGCAACGCGCGCTGGGCGTCGATCGGCAGTGCGGTCGCGGCGGGCCTGATGGGGCTCACCGGCGAA TACTTCTCCGCGCGCGCGGTGTTCTGGCTGACCGCCGTGCTGGCGCTGCCCGCGCTGTTCGCGCTCGCGATGATCCAGCC GACGCACCAGGTGATTCCGCAGTCGTCGAAGCCTGACGAGCTCGACGAAGCCGGCGAGCGCGAAACGCTGCTCGAACTGC TGCGCGACCGCCGGATGCTGATCTTCGCGGCCTGCGTCGTGCTGTTCCACCTGTCGAACGCCGCGATGCTCAACCTCGCG GCCGGCGAAGTCACGGCCGGGATGGGCGAGAACGTGCAGCTCGTGATCGCCGCGTGCATCATCGTGCCGCAGGCGATCGT CGCGATGCTGTCGCCGTGGGTCGGCCGCTCCGCGCAGCGCTGGGGGCGCCGGCCGATCCTGCTGCTCGGCTTCTCCGCGC TGCCGGTGCGCGCACTGCTGTTCGCCGGCGTCAGCAGCCCGTACCTGCTCGTGCCGGTGCAGATGCTCGACGGCATCAGC GCGGCCGTGTTCGGCGTGATGCTGCCGCTGATCGCGGCCGACGTCGCGGGCGGCAAGGGCCGCTACAACCTGTGTATCGG GCTGTTCGGGCTCGCGGCCGGGATCGGCGCGACGCTCAGCACGGCCGTGGCCGGCTACGTCGCCGACCACTTCGGCAACG CGGTCAGTTTCTTCGGGCTCGCGGCCGCCGGCGCGCTCGCGGTGCTGTTGGTCTGGCTCGTGATGCCCGAAACGCGCGTG GAGAACGGCGATGCGACGGCCGACGAACCGGCGGCCGCGTCGCCCGAACAGGCGCATTGA
Upstream 100 bases:
>100_bases AGATCAAGGCCTCGCCGCCGTACGCGGCCGACAAGCCGATCGTCGCGGTCTTCCCGCCCGTTGCCCCGGCCGCACCGGCC TCGTCTGCGAGTGCTACCCG
Downstream 100 bases:
>100_bases CGGCAGCGCGCCGCCCGCTACCCGCTTCTTGGCCGATGCACGATGGATACGATCAGGACACTCAACGAAGCCCGCCAGCA GATCCAGCAGTCGATCTTCG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MTIKHSVSVRSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAA WAIAAIILSAVLLASSPTIVPVIAAEVFHGFASCMLVPAMAAISFSLVGRADLGDRLGRNARWASIGSAVAAGLMGLTGE YFSARAVFWLTAVLALPALFALAMIQPTHQVIPQSSKPDELDEAGERETLLELLRDRRMLIFAACVVLFHLSNAAMLNLA AGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFSALPVRALLFAGVSSPYLLVPVQMLDGIS AAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGATLSTAVAGYVADHFGNAVSFFGLAAAGALAVLLVWLVMPETRV ENGDATADEPAAASPEQAH
Sequences:
>Translated_419_residues MTIKHSVSVRSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAA WAIAAIILSAVLLASSPTIVPVIAAEVFHGFASCMLVPAMAAISFSLVGRADLGDRLGRNARWASIGSAVAAGLMGLTGE YFSARAVFWLTAVLALPALFALAMIQPTHQVIPQSSKPDELDEAGERETLLELLRDRRMLIFAACVVLFHLSNAAMLNLA AGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFSALPVRALLFAGVSSPYLLVPVQMLDGIS AAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGATLSTAVAGYVADHFGNAVSFFGLAAAGALAVLLVWLVMPETRV ENGDATADEPAAASPEQAH >Mature_418_residues TIKHSVSVRSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAAW AIAAIILSAVLLASSPTIVPVIAAEVFHGFASCMLVPAMAAISFSLVGRADLGDRLGRNARWASIGSAVAAGLMGLTGEY FSARAVFWLTAVLALPALFALAMIQPTHQVIPQSSKPDELDEAGERETLLELLRDRRMLIFAACVVLFHLSNAAMLNLAA GEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFSALPVRALLFAGVSSPYLLVPVQMLDGISA AVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGATLSTAVAGYVADHFGNAVSFFGLAAAGALAVLLVWLVMPETRVE NGDATADEPAAASPEQAH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 43557; Mature: 43425
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKHSVSVRSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMV CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHH SQVPGGAAVDALKNKKGAAAWAIAAIILSAVLLASSPTIVPVIAAEVFHGFASCMLVPAM HHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAISFSLVGRADLGDRLGRNARWASIGSAVAAGLMGLTGEYFSARAVFWLTAVLALPALF HHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALAMIQPTHQVIPQSSKPDELDEAGERETLLELLRDRRMLIFAACVVLFHLSNAAMLNLA HHHHHCCHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE AGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFSALPVRALL CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCEEEECCCHHHHHHHH FAGVSSPYLLVPVQMLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGATLS HHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH TAVAGYVADHFGNAVSFFGLAAAGALAVLLVWLVMPETRVENGDATADEPAAASPEQAH HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TIKHSVSVRSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMV CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHH SQVPGGAAVDALKNKKGAAAWAIAAIILSAVLLASSPTIVPVIAAEVFHGFASCMLVPAM HHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAISFSLVGRADLGDRLGRNARWASIGSAVAAGLMGLTGEYFSARAVFWLTAVLALPALF HHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALAMIQPTHQVIPQSSKPDELDEAGERETLLELLRDRRMLIFAACVVLFHLSNAAMLNLA HHHHHCCHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE AGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFSALPVRALL CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCEEEECCCHHHHHHHH FAGVSSPYLLVPVQMLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGATLS HHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH TAVAGYVADHFGNAVSFFGLAAAGALAVLLVWLVMPETRVENGDATADEPAAASPEQAH HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]