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The map label for this gene is 116690287

Identifier: 116690287

GI number: 116690287

Start: 2521856

End: 2522419

Strand: Direct

Name: 116690287

Synonym: Bcen2424_2266

Alternate gene names: NA

Gene position: 2521856-2522419 (Clockwise)

Preceding gene: 116690279

Following gene: 116690288

Centisome position: 72.39

GC content: 61.52

Gene sequence:

>564_bases
ATGGCATCAGACAAGGAACTCGCCGACTTTCTGGCGGGCGTCGAAAGGCGCGCGTTCAAGCAGGCTGCGTACGCCGTGCG
TGACGACGATGCGTCGCTCGACATCGTGCAGGACGCGATGATCAAGCTCGCGGAAAAGTACGGCGACCGGCCGTCGGCCG
AGCTGCCGCTGCTTTTTCAGCGGATCCTGCAGAACGCGATCCACGACTGGTTCCGCCGGCAGAAGGTCCGCAATACGTGG
GTGACGCTCTTCTCGTCGCTGAACAACACCGACGACGACGACTTCGACCCGCTCGAAACACTCGAATCCGCGGACGACAA
CGCGGGCGTCGAGAGCAGCGAGCACCGCCTCGAACGAGAGCAGGTTCTGGCCCTGATCGACGAAGAAATCCAGAAACTTC
CGGCGCGTCAACGGGAAGCGTTCCTGATGCGTTATTGGGAAGATATGGATGTCGCCGAGACTGCCGCCGCAATGGGGTGC
TCCGAGGGCAGCGTCAAGACGCACTGCTCACGAGCCACTCATACCCTGGCGCAAGCGCTCAAGGCCAAAGGAATCACGCT
ATGA

Upstream 100 bases:

>100_bases
CGGTGCCAAGCCGCACGAAAATTTGATAGCATCCGCGGGTTTTACGAAATTTTTCGACCTTTTACACCACGCAGCGGGCC
GCAGCGCATACCTTCACGGA

Downstream 100 bases:

>100_bases
GCTCCGCAAACCGAGAACACGAATTCGCGCTGAAGGTGCGCCGCGCGCTGGACGAGCGCGCGGCCGCGCTGCCTGCCGCG
ACCACCGATCGGCTGGCCGT

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; Sigma-; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIKLAEKYGDRPSAELPLLFQRILQNAIHDWFRRQKVRNTW
VTLFSSLNNTDDDDFDPLETLESADDNAGVESSEHRLEREQVLALIDEEIQKLPARQREAFLMRYWEDMDVAETAAAMGC
SEGSVKTHCSRATHTLAQALKAKGITL

Sequences:

>Translated_187_residues
MASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIKLAEKYGDRPSAELPLLFQRILQNAIHDWFRRQKVRNTW
VTLFSSLNNTDDDDFDPLETLESADDNAGVESSEHRLEREQVLALIDEEIQKLPARQREAFLMRYWEDMDVAETAAAMGC
SEGSVKTHCSRATHTLAQALKAKGITL
>Mature_186_residues
ASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIKLAEKYGDRPSAELPLLFQRILQNAIHDWFRRQKVRNTWV
TLFSSLNNTDDDDFDPLETLESADDNAGVESSEHRLEREQVLALIDEEIQKLPARQREAFLMRYWEDMDVAETAAAMGCS
EGSVKTHCSRATHTLAQALKAKGITL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21147; Mature: 21016

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIKLAEKYGDRPSAELPLLFQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RILQNAIHDWFRRQKVRNTWVTLFSSLNNTDDDDFDPLETLESADDNAGVESSEHRLERE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
QVLALIDEEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAQAL
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KAKGITL
HHCCCCC
>Mature Secondary Structure 
ASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIKLAEKYGDRPSAELPLLFQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RILQNAIHDWFRRQKVRNTWVTLFSSLNNTDDDDFDPLETLESADDNAGVESSEHRLERE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
QVLALIDEEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAQAL
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KAKGITL
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA