| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690243
Identifier: 116690243
GI number: 116690243
Start: 2477863
End: 2479017
Strand: Reverse
Name: 116690243
Synonym: Bcen2424_2222
Alternate gene names: NA
Gene position: 2479017-2477863 (Counterclockwise)
Preceding gene: 116690244
Following gene: 116690238
Centisome position: 71.16
GC content: 63.9
Gene sequence:
>1155_bases ATGGCCCTTTCGATCACCAGTAATTTCGACGCAGGCGCAATCGACGTCGTGTCGTGCGACAGCCCCGACGCAATCCGGCT GCGCGTGCGCGGCGACAATCGTTCGGAGTTCGCGCAATGGTTTTACTACCGCTTGACGGGTGCACGCGGCGAGCGATGCG TGATGACGTTCGAGAACGCAGCCGAATGCGCGTATCCGTCGGGTTGGCGCAACTACCACGCGGTGGCGAGCTACGACCGG GTCGACTGGTTCCGCGTACCGACGACGTTCGACGGCAAGACGATGACCATCGACCATACGCCGGAGTTCGACAGCATCTA CTACGCGTATTTCGAACCGTACTCGGAAGAGCGTCACGCGGCGTTTCTCGGTGCGGTCCAGCAGTTGCCGCAGGCGAGCG TCGTCGAGCTCGGCCGTACGGTCGAAGGCCGTCCGATGTCGCTGCTGACGCTCGGCACGCCGGAAACCGATGGTGCGCCG AAGAAGAAGGTGTGGATCATCGCGCGTCAGCATCCGGGCGAATCGATGGCCGAGTGGTTCGTCGAAGGCCTGGTCAAGCG GCTGGCCGGATGGGGCGACTGGGCTGGCGATCCGGTTGCGCGCAAGCTCTACGATCGCGCGACGTTCTACATCGTCCCGA ACATGAACCCGGACGGCAGCGTGCACGGTAACCTGCGCACCAATGCGGCCGGCGCGAACCTGAACCGCGAGTGGATGGCA CCCGATGCCGAGCGCAGCCCCGAAGTGCTGGCCGTGCGCGATGCGATCCACGCGATCGGTTGCGACATGTTCTTCGACAT TCACGGCGACGAGGATCTGCCGTACGTGTTCGTCGCCGGCTCGGAGATGCTGCCAAGCTTTACCGAGCAGCAGGGCAAGG AGCAGGCTGCGTTCATCGACGCGTTCAAGGTCGCAAGCCCCGACTTCCAGACCGAGCATGGCTACGCGGCGAGCAAGTAC AAGGAAGATGCGCTGAAGCTCGCGTCGAAGTACATCGGCCACCAGTTCGGCTGTCTGTCGTTGACGCTCGAAATGCCGTT CAAGGACAACGCCAACCTGCCCGACGAGCGCGTCGGCTGGAACGGCGAGCGCAGCGCGGCGCTCGGCGCGGCGATGCTCG CCGCGATCCTGGTGCACATCGACACGTTCGGTTAA
Upstream 100 bases:
>100_bases AGACCAGTGTAAGCGCCAAAGCGCTAACACCAGTCGACAGCTTTGCATGGGACCGGAGTAAGCGCTAAAGCGCTAACTCC GGTCGACAAAGGAGAGATAG
Downstream 100 bases:
>100_bases GCACGGCCGTCGTCGCATGAAAAAAGCCGACGCATCTTGCGATGCGTCGGCTTTTTTGCTGCTGTCGTTGCCGCTCCGTC GTATCAGGACTTCTTCGCGG
Product: peptidase M14, carboxypeptidase A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MALSITSNFDAGAIDVVSCDSPDAIRLRVRGDNRSEFAQWFYYRLTGARGERCVMTFENAAECAYPSGWRNYHAVASYDR VDWFRVPTTFDGKTMTIDHTPEFDSIYYAYFEPYSEERHAAFLGAVQQLPQASVVELGRTVEGRPMSLLTLGTPETDGAP KKKVWIIARQHPGESMAEWFVEGLVKRLAGWGDWAGDPVARKLYDRATFYIVPNMNPDGSVHGNLRTNAAGANLNREWMA PDAERSPEVLAVRDAIHAIGCDMFFDIHGDEDLPYVFVAGSEMLPSFTEQQGKEQAAFIDAFKVASPDFQTEHGYAASKY KEDALKLASKYIGHQFGCLSLTLEMPFKDNANLPDERVGWNGERSAALGAAMLAAILVHIDTFG
Sequences:
>Translated_384_residues MALSITSNFDAGAIDVVSCDSPDAIRLRVRGDNRSEFAQWFYYRLTGARGERCVMTFENAAECAYPSGWRNYHAVASYDR VDWFRVPTTFDGKTMTIDHTPEFDSIYYAYFEPYSEERHAAFLGAVQQLPQASVVELGRTVEGRPMSLLTLGTPETDGAP KKKVWIIARQHPGESMAEWFVEGLVKRLAGWGDWAGDPVARKLYDRATFYIVPNMNPDGSVHGNLRTNAAGANLNREWMA PDAERSPEVLAVRDAIHAIGCDMFFDIHGDEDLPYVFVAGSEMLPSFTEQQGKEQAAFIDAFKVASPDFQTEHGYAASKY KEDALKLASKYIGHQFGCLSLTLEMPFKDNANLPDERVGWNGERSAALGAAMLAAILVHIDTFG >Mature_383_residues ALSITSNFDAGAIDVVSCDSPDAIRLRVRGDNRSEFAQWFYYRLTGARGERCVMTFENAAECAYPSGWRNYHAVASYDRV DWFRVPTTFDGKTMTIDHTPEFDSIYYAYFEPYSEERHAAFLGAVQQLPQASVVELGRTVEGRPMSLLTLGTPETDGAPK KKVWIIARQHPGESMAEWFVEGLVKRLAGWGDWAGDPVARKLYDRATFYIVPNMNPDGSVHGNLRTNAAGANLNREWMAP DAERSPEVLAVRDAIHAIGCDMFFDIHGDEDLPYVFVAGSEMLPSFTEQQGKEQAAFIDAFKVASPDFQTEHGYAASKYK EDALKLASKYIGHQFGCLSLTLEMPFKDNANLPDERVGWNGERSAALGAAMLAAILVHIDTFG
Specific function: Unknown
COG id: COG2866
COG function: function code E; Predicted carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI190194403, Length=371, Percent_Identity=26.1455525606469, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI120444924, Length=311, Percent_Identity=26.0450160771704, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI222352158, Length=318, Percent_Identity=25.1572327044025, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI31657119, Length=312, Percent_Identity=26.9230769230769, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI170763513, Length=333, Percent_Identity=24.9249249249249, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI115533904, Length=370, Percent_Identity=24.8648648648649, Blast_Score=103, Evalue=2e-22, Organism=Caenorhabditis elegans, GI193202888, Length=191, Percent_Identity=30.3664921465969, Blast_Score=88, Evalue=8e-18, Organism=Drosophila melanogaster, GI28571179, Length=323, Percent_Identity=26.625386996904, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI24641847, Length=322, Percent_Identity=26.7080745341615, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI161077807, Length=323, Percent_Identity=26.625386996904, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24641845, Length=323, Percent_Identity=26.625386996904, Blast_Score=97, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 [H]
Pfam domain/function: PF00246 Peptidase_M14 [H]
EC number: NA
Molecular weight: Translated: 42712; Mature: 42581
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALSITSNFDAGAIDVVSCDSPDAIRLRVRGDNRSEFAQWFYYRLTGARGERCVMTFENA CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHEEEECCCCCEEEEEECCC AECAYPSGWRNYHAVASYDRVDWFRVPTTFDGKTMTIDHTPEFDSIYYAYFEPYSEERHA CCCCCCCCCCCCCEEECCCCCEEEECCCEECCCEEEECCCCCCCCEEEEEECCCCCCHHH AFLGAVQQLPQASVVELGRTVEGRPMSLLTLGTPETDGAPKKKVWIIARQHPGESMAEWF HHHHHHHHCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHH VEGLVKRLAGWGDWAGDPVARKLYDRATFYIVPNMNPDGSVHGNLRTNAAGANLNREWMA HHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEEECCCCCCCEECCEEECCCCCCCCCCCCC PDAERSPEVLAVRDAIHAIGCDMFFDIHGDEDLPYVFVAGSEMLPSFTEQQGKEQAAFID CCCCCCCCEEEHHHHHHHHCCEEEEEECCCCCCCEEEEECCHHCCCHHHHCCCHHHHHHH AFKVASPDFQTEHGYAASKYKEDALKLASKYIGHQFGCLSLTLEMPFKDNANLPDERVGW HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHCCC NGERSAALGAAMLAAILVHIDTFG CCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ALSITSNFDAGAIDVVSCDSPDAIRLRVRGDNRSEFAQWFYYRLTGARGERCVMTFENA EEEEECCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHEEEECCCCCEEEEEECCC AECAYPSGWRNYHAVASYDRVDWFRVPTTFDGKTMTIDHTPEFDSIYYAYFEPYSEERHA CCCCCCCCCCCCCEEECCCCCEEEECCCEECCCEEEECCCCCCCCEEEEEECCCCCCHHH AFLGAVQQLPQASVVELGRTVEGRPMSLLTLGTPETDGAPKKKVWIIARQHPGESMAEWF HHHHHHHHCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHH VEGLVKRLAGWGDWAGDPVARKLYDRATFYIVPNMNPDGSVHGNLRTNAAGANLNREWMA HHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEEECCCCCCCEECCEEECCCCCCCCCCCCC PDAERSPEVLAVRDAIHAIGCDMFFDIHGDEDLPYVFVAGSEMLPSFTEQQGKEQAAFID CCCCCCCCEEEHHHHHHHHCCEEEEEECCCCCCCEEEEECCHHCCCHHHHCCCHHHHHHH AFKVASPDFQTEHGYAASKYKEDALKLASKYIGHQFGCLSLTLEMPFKDNANLPDERVGW HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHCCC NGERSAALGAAMLAAILVHIDTFG CCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8320209 [H]