| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is phaP [H]
Identifier: 116690155
GI number: 116690155
Start: 2366285
End: 2366851
Strand: Direct
Name: phaP [H]
Synonym: Bcen2424_2134
Alternate gene names: 116690155
Gene position: 2366285-2366851 (Clockwise)
Preceding gene: 116690153
Following gene: 116690159
Centisome position: 67.92
GC content: 61.55
Gene sequence:
>567_bases ATGTCCTTGCTGACCCCCGAGCAAATCGCCGCCGCCCAGAAAGCCAACCTCGAAAGCCTGTTCGGTCTGACGACCAAGGC GTTCGAAGGCGTCGAAAAGCTGATCGAACTCAACCTGCAGGTCGTGAAGTCGACGCTGACCGAGAGCCAGGAAAACGCGC AGCGCCTGCTGTCGGTGAAGGACGCGCAGGAACTGATCGCGCTGCAAGCGAGCCTGTCGCAGCCGGTCGCGGAAAAGGTG CTGTCGTACGGTCGTCACCTGTACGAAATCGCATCGTCGACGCAAGCCGAGTTCGCGAAGGTCGCCGAAGCGCAATTCGA AGAGCAGAACAAGAAGGTCCAGGCACTCGTCGACAACGTCGCGAAGAACGCCCCGGCCGGTTCGGAAACGGCTGTCGCCG CACTGAAGTCGGCGCTGAACGCTGCGAACACCACGTACGAAACGGTCCAGAAGGCCACGAAGCAAGCAGTGGAAATCGCT GAAACGAACTTCAACGCCGCTGCTGCCGTCGCAACGAAGGCTGCCACCGCTGCTGCCGCACGTCGTTCGAGCAAGCCGGC CGCGTAA
Upstream 100 bases:
>100_bases AGGCCTCATTGCTGCGTTGCACAAAGCACGCGGCGCCGAAGTTCCCCAGCGTAGTGCCCTTTATTCTGCGATCGACGCGA TCGCTTTTCAGGAGCCTGAC
Downstream 100 bases:
>100_bases GCGTCCCCTGCTCCTGAAAGAGCCGCGCCCAGCGCGGCTTTTTCGTTTCTGGCGCCGGAATGCGCGCGAGCGGCAACTGC CCGCCACATTCGAGCCTGTC
Product: phasin family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSLLTPEQIAAAQKANLESLFGLTTKAFEGVEKLIELNLQVVKSTLTESQENAQRLLSVKDAQELIALQASLSQPVAEKV LSYGRHLYEIASSTQAEFAKVAEAQFEEQNKKVQALVDNVAKNAPAGSETAVAALKSALNAANTTYETVQKATKQAVEIA ETNFNAAAAVATKAATAAAARRSSKPAA
Sequences:
>Translated_188_residues MSLLTPEQIAAAQKANLESLFGLTTKAFEGVEKLIELNLQVVKSTLTESQENAQRLLSVKDAQELIALQASLSQPVAEKV LSYGRHLYEIASSTQAEFAKVAEAQFEEQNKKVQALVDNVAKNAPAGSETAVAALKSALNAANTTYETVQKATKQAVEIA ETNFNAAAAVATKAATAAAARRSSKPAA >Mature_187_residues SLLTPEQIAAAQKANLESLFGLTTKAFEGVEKLIELNLQVVKSTLTESQENAQRLLSVKDAQELIALQASLSQPVAEKVL SYGRHLYEIASSTQAEFAKVAEAQFEEQNKKVQALVDNVAKNAPAGSETAVAALKSALNAANTTYETVQKATKQAVEIAE TNFNAAAAVATKAATAAAARRSSKPAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic granule. Note=Associated with the surface of cytoplasmic polyhydroxyalkanoate granules [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018968 [H]
Pfam domain/function: PF09361 Phasin_2 [H]
EC number: NA
Molecular weight: Translated: 19817; Mature: 19686
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLTPEQIAAAQKANLESLFGLTTKAFEGVEKLIELNLQVVKSTLTESQENAQRLLSVK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAQELIALQASLSQPVAEKVLSYGRHLYEIASSTQAEFAKVAEAQFEEQNKKVQALVDNV HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKNAPAGSETAVAALKSALNAANTTYETVQKATKQAVEIAETNFNAAAAVATKAATAAAA HHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RRSSKPAA HHCCCCCC >Mature Secondary Structure SLLTPEQIAAAQKANLESLFGLTTKAFEGVEKLIELNLQVVKSTLTESQENAQRLLSVK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAQELIALQASLSQPVAEKVLSYGRHLYEIASSTQAEFAKVAEAQFEEQNKKVQALVDNV HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKNAPAGSETAVAALKSALNAANTTYETVQKATKQAVEIAETNFNAAAAVATKAATAAAA HHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RRSSKPAA HHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA