| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is wzb [C]
Identifier: 116690149
GI number: 116690149
Start: 2360238
End: 2360720
Strand: Reverse
Name: wzb [C]
Synonym: Bcen2424_2128
Alternate gene names: 116690149
Gene position: 2360720-2360238 (Counterclockwise)
Preceding gene: 116690150
Following gene: 116690148
Centisome position: 67.76
GC content: 70.19
Gene sequence:
>483_bases ATGACCCGCGTTGCGATCTGTTTCGTCTGTCTCGGCAACATCTGCCGTTCGCCCACCGCGGAAGGCGTGATGCGCCACCA GGTCGACGCGGCCGCGCTGGCCGACCGGATCGCGATCGATTCGGCCGGCACCGGCGACTGGCACGTGGGCGAGCCGCCCG ATACGCGGGCGCAGGCGGCGGCCCGCAGCCGCGGCTACGATCTGTCGGCGCTGCGCGCCCGGCAGGTGAGCGCGGCGGAT TTCGAACAATTCGACCTGCTGCTCGCGATGGACGAGGCGAATCTCGCCGAACTGCGCCGCCGTTGCCCGCCGCAGCACCG CGAGAAAGTGCGCCTGTTGATGGAATTCGCGCCGGGCGCGACCGAAACCGAAGTGGCCGATCCGTATTTCGGCGGCGCGC AAGGCTTCGAGCAGGTGCTCGACCAGGTCGAGCGCGCATGCGCGGGTCTGCTGGAGACGCTGCGCGCACGCACGGCGCAC TGA
Upstream 100 bases:
>100_bases GCATGGCGCCGTCGCTTTGCGCGGCGGCGCGATTTCGGCCGCCTTTGTATAATGGCGTGTTCTTCTCCCACGCGGTCCGC CGCGGCTTTTCGATAGTGCG
Downstream 100 bases:
>100_bases CCGCACGCTATTCAGCGGCCTGCGAATACCCTTTCAAAGACATGGATACTTGACTAAAAACGTCAAATATTTATACTTGA CCAAAATCGTCAAGATTGCA
Product: protein tyrosine phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MTRVAICFVCLGNICRSPTAEGVMRHQVDAAALADRIAIDSAGTGDWHVGEPPDTRAQAAARSRGYDLSALRARQVSAAD FEQFDLLLAMDEANLAELRRRCPPQHREKVRLLMEFAPGATETEVADPYFGGAQGFEQVLDQVERACAGLLETLRARTAH
Sequences:
>Translated_160_residues MTRVAICFVCLGNICRSPTAEGVMRHQVDAAALADRIAIDSAGTGDWHVGEPPDTRAQAAARSRGYDLSALRARQVSAAD FEQFDLLLAMDEANLAELRRRCPPQHREKVRLLMEFAPGATETEVADPYFGGAQGFEQVLDQVERACAGLLETLRARTAH >Mature_159_residues TRVAICFVCLGNICRSPTAEGVMRHQVDAAALADRIAIDSAGTGDWHVGEPPDTRAQAAARSRGYDLSALRARQVSAADF EQFDLLLAMDEANLAELRRRCPPQHREKVRLLMEFAPGATETEVADPYFGGAQGFEQVLDQVERACAGLLETLRARTAH
Specific function: Dephosphorylates Wzc. Required For The Extracellular Polysaccharide Colanic Acid Synthesis. Probably Involved In The Export Of Colanic Acid From The Cell To Medium. [C]
COG id: COG0394
COG function: function code T; Protein-tyrosine-phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the low molecular weight phosphotyrosine protein phosphatase family [H]
Homologues:
Organism=Homo sapiens, GI6005988, Length=150, Percent_Identity=40.6666666666667, Blast_Score=118, Evalue=2e-27, Organism=Homo sapiens, GI4757714, Length=150, Percent_Identity=39.3333333333333, Blast_Score=116, Evalue=9e-27, Organism=Homo sapiens, GI96304457, Length=78, Percent_Identity=42.3076923076923, Blast_Score=70, Evalue=8e-13, Organism=Escherichia coli, GI87081812, Length=142, Percent_Identity=31.6901408450704, Blast_Score=62, Evalue=1e-11, Organism=Escherichia coli, GI1788375, Length=143, Percent_Identity=33.5664335664336, Blast_Score=62, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6325330, Length=153, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=4e-28, Organism=Drosophila melanogaster, GI78706766, Length=148, Percent_Identity=37.8378378378378, Blast_Score=109, Evalue=7e-25, Organism=Drosophila melanogaster, GI78706768, Length=148, Percent_Identity=37.8378378378378, Blast_Score=109, Evalue=7e-25, Organism=Drosophila melanogaster, GI78706770, Length=156, Percent_Identity=37.1794871794872, Blast_Score=105, Evalue=1e-23, Organism=Drosophila melanogaster, GI78706772, Length=156, Percent_Identity=37.1794871794872, Blast_Score=105, Evalue=1e-23, Organism=Drosophila melanogaster, GI78706764, Length=125, Percent_Identity=37.6, Blast_Score=98, Evalue=2e-21, Organism=Drosophila melanogaster, GI78711846, Length=157, Percent_Identity=35.031847133758, Blast_Score=97, Evalue=4e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000106 - InterPro: IPR017867 [H]
Pfam domain/function: PF01451 LMWPc [H]
EC number: =3.1.3.48 [H]
Molecular weight: Translated: 17467; Mature: 17336
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRVAICFVCLGNICRSPTAEGVMRHQVDAAALADRIAIDSAGTGDWHVGEPPDTRAQAA CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH ARSRGYDLSALRARQVSAADFEQFDLLLAMDEANLAELRRRCPPQHREKVRLLMEFAPGA HHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHCCHHHHHHHHHHHHHCCCC TETEVADPYFGGAQGFEQVLDQVERACAGLLETLRARTAH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TRVAICFVCLGNICRSPTAEGVMRHQVDAAALADRIAIDSAGTGDWHVGEPPDTRAQAA CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH ARSRGYDLSALRARQVSAADFEQFDLLLAMDEANLAELRRRCPPQHREKVRLLMEFAPGA HHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHCCHHHHHHHHHHHHHCCCC TETEVADPYFGGAQGFEQVLDQVERACAGLLETLRARTAH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]