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The map label for this gene is yjjV [H]

Identifier: 116690133

GI number: 116690133

Start: 2344339

End: 2345127

Strand: Reverse

Name: yjjV [H]

Synonym: Bcen2424_2112

Alternate gene names: 116690133

Gene position: 2345127-2344339 (Counterclockwise)

Preceding gene: 116690134

Following gene: 116690132

Centisome position: 67.31

GC content: 68.19

Gene sequence:

>789_bases
ATGTGGATCGACACGCACTGCCATCTCGATGCCGCCGAGTTCGACGCCGACCGCGACGCGGTCGCGCAGGCTGCACACGC
GGCCGGCGTGTCGCGCATCGTGATCCCGAGCATCGGGCGCGACAACTTCACGACGGTGCGCGAACTCGCGCAGCGCACGC
CGGGCGCGGCGTACGCGCTCGGTATCCATCCGATGTATACGCCGCAGGCGCGCGACGAGGATCTCGACCGGCTGCGCATG
GAGATCGAGGCAAGCCTCGACGATCCGCGTTTCGTCGCGATCGGCGAGATCGGGCTCGACTATTTCGTGCCGGGGCTCGA
CGAAGACCGGCAGCAATTCTTCTACCAGGGCCAGCTCCGGCTGGCGCGGGAATTCGACCTGCCGGTGCTGTGTCACGTGC
GCAAGTCGCAGGACCGCGTGCTGGCCGGGCTGCGCCGTTTCGGCGTGCGGCGCGGCATCGCGCATGCGTTCAACGGCAGT
TTCCAGCAGGCCGAAGCGTATCTGGCGCAGGGCCTCCATCTCGGCTTCGGCGGCAACGTGACCTTCACGCGTGCGCGGCA
GATCCGCCGGCTCGCCACCGAGTTGCCGCTCGACGCGCTCGTCGTCGAAACCGACGCGCCCGACATCGCGCCCGAATGGG
CATACAAATCCCGCAATACGCCCGACCAGGTGCCGCGCATCGGCGCCGTGCTCGCCGAATTGCGCGGGCTCGATACTGGC
GAACTGGCCGTATGCACTTCGGCTAACGCGCTCGCCGCGCTGCCGCGACTCGCACTTTCGTCCGCATAA

Upstream 100 bases:

>100_bases
GGTGCTGCACGAGGAGCCGGCGCTGCCGGTGTAAAAAAGCCACGCCGTTGGCCGGCCGCCGGTTCGTCGCGGCACGGCGC
AACGACGCAGGACCGCTGCC

Downstream 100 bases:

>100_bases
TCGTTGCCGGAAGGCGCCGTATTGGCAGGGTGGCGCCGGGTCGACGAGGAGGCGGAATGCGCGTGGGGTGGATCGCGTTC
GCGCTCGGCGTCGTCGTGCT

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MWIDTHCHLDAAEFDADRDAVAQAAHAAGVSRIVIPSIGRDNFTTVRELAQRTPGAAYALGIHPMYTPQARDEDLDRLRM
EIEASLDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLRLAREFDLPVLCHVRKSQDRVLAGLRRFGVRRGIAHAFNGS
FQQAEAYLAQGLHLGFGGNVTFTRARQIRRLATELPLDALVVETDAPDIAPEWAYKSRNTPDQVPRIGAVLAELRGLDTG
ELAVCTSANALAALPRLALSSA

Sequences:

>Translated_262_residues
MWIDTHCHLDAAEFDADRDAVAQAAHAAGVSRIVIPSIGRDNFTTVRELAQRTPGAAYALGIHPMYTPQARDEDLDRLRM
EIEASLDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLRLAREFDLPVLCHVRKSQDRVLAGLRRFGVRRGIAHAFNGS
FQQAEAYLAQGLHLGFGGNVTFTRARQIRRLATELPLDALVVETDAPDIAPEWAYKSRNTPDQVPRIGAVLAELRGLDTG
ELAVCTSANALAALPRLALSSA
>Mature_262_residues
MWIDTHCHLDAAEFDADRDAVAQAAHAAGVSRIVIPSIGRDNFTTVRELAQRTPGAAYALGIHPMYTPQARDEDLDRLRM
EIEASLDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLRLAREFDLPVLCHVRKSQDRVLAGLRRFGVRRGIAHAFNGS
FQQAEAYLAQGLHLGFGGNVTFTRARQIRRLATELPLDALVVETDAPDIAPEWAYKSRNTPDQVPRIGAVLAELRGLDTG
ELAVCTSANALAALPRLALSSA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=30.8550185873606, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=30.8550185873606, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI226061853, Length=276, Percent_Identity=30.0724637681159, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI226061614, Length=258, Percent_Identity=28.2945736434109, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI226061595, Length=232, Percent_Identity=30.1724137931034, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI14042943, Length=267, Percent_Identity=25.0936329588015, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI225903424, Length=167, Percent_Identity=30.5389221556886, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI87082439, Length=243, Percent_Identity=39.5061728395062, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787342, Length=255, Percent_Identity=32.5490196078431, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI48994985, Length=255, Percent_Identity=29.4117647058824, Blast_Score=105, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=26.8199233716475, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=277, Percent_Identity=25.2707581227437, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24648690, Length=278, Percent_Identity=27.6978417266187, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI221330018, Length=214, Percent_Identity=28.0373831775701, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24586117, Length=214, Percent_Identity=28.0373831775701, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28847; Mature: 28847

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIDTHCHLDAAEFDADRDAVAQAAHAAGVSRIVIPSIGRDNFTTVRELAQRTPGAAYAL
CCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEE
GIHPMYTPQARDEDLDRLRMEIEASLDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLR
ECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHH
LAREFDLPVLCHVRKSQDRVLAGLRRFGVRRGIAHAFNGSFQQAEAYLAQGLHLGFGGNV
HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCE
TFTRARQIRRLATELPLDALVVETDAPDIAPEWAYKSRNTPDQVPRIGAVLAELRGLDTG
EHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
ELAVCTSANALAALPRLALSSA
CEEEEECCHHHHHHHHHHHCCC
>Mature Secondary Structure
MWIDTHCHLDAAEFDADRDAVAQAAHAAGVSRIVIPSIGRDNFTTVRELAQRTPGAAYAL
CCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEE
GIHPMYTPQARDEDLDRLRMEIEASLDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLR
ECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHH
LAREFDLPVLCHVRKSQDRVLAGLRRFGVRRGIAHAFNGSFQQAEAYLAQGLHLGFGGNV
HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCE
TFTRARQIRRLATELPLDALVVETDAPDIAPEWAYKSRNTPDQVPRIGAVLAELRGLDTG
EHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
ELAVCTSANALAALPRLALSSA
CEEEEECCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]