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The map label for this gene is ycfD [H]

Identifier: 116690112

GI number: 116690112

Start: 2322984

End: 2324204

Strand: Direct

Name: ycfD [H]

Synonym: Bcen2424_2091

Alternate gene names: 116690112

Gene position: 2322984-2324204 (Clockwise)

Preceding gene: 116690110

Following gene: 116690113

Centisome position: 66.68

GC content: 66.75

Gene sequence:

>1221_bases
ATGCGCAACCGGTCTCAAGCCGAACCGCGGGATACCGCTGCCGCCCCGCTCGGCGCGCCGCCCTCCGATCTTCCCACGCC
GCTGCTCGGCGGCCTCACGCCGGCGCAATTCATGCGCGGCTACTGGCAAAAGAAGCCGCTGCTGATCCGCCAGGCGATCC
CCGGCGTCGTGTCGCCGGTCACGCGCGATGCGCTGTTCGAGCTCGCCGCCGACTATGACGCGGAATCGCGATTGATCACC
CATTTTCGTAACAAGTGGCAACTGGCGCACGGTCCGTTCGAGCCCGACGCGCTGCCTGCCGTCACGCGCAAATCCTGGAC
CCTGCTCGTGCAGGGGCTCGACCTGCACGTCGACGCGGCGCGCGCGTTGCTCGACCGCTTCCGTTTCATCCCCGACGCGC
GGCTGGACGACCTGATGATCTCGTATGCGACGGACGGCGGCGGTGTCGGCCCGCACTTCGACTCGTATGACGTGTTCCTG
CTGCAGGTCGAAGGCCGGCGCCGCTGGCGGGTCGGCGCGCAGAAGGATCTGTCGCTGCAGCCGGACGTGCCGCTGAAGAT
CCTCGAAAACTTCGAGCCGAGCGACGAATGGGTGCTGGAGCCCGGCGACATGCTGTACCTGCCGCCGCACATCGCGCACG
ACGGCGTGGCCGAAGGCGAATGCATGACCTGCTCGATCGGCTTCCGGGCCCCGTCCGCCGGCGAACTGGGCGCCCAGTTC
CTGTACTACCTCGCGGAGCGCGGCGGCCTGCGCGACGCGGGGGGCGACGACATCTACCGCGATCCGAAGCAGCCGGCCGT
CGATGCGCCCGCGCAACTGCCGCCGGCGATGGTCGAACGCGTGGCCGAGATCGTCGACGCGATCCGCTGGCGCAAGCGCG
ACGTCGCCGAATTCCTCGGCTGCTACCTGAGCGAGCCGAAATCGAACGTCGTTTTCGACCCGCCCGAGCGCCCGCTGTCC
GAGGCCGCATTCGTCACGCAAGCGTCACGCCGTGGCGTGCGTCTCGACAGAAGGGCCGCATTGATGTATAACGCGCGCTC
GTACTTCATTAATGGCGAGGAAGGACCGCTCGCGGAAGCCGAGGAATGGCTGCCCGAACTGGCCAATCAACGTCAGATGG
AGGCGAAACGGTTTGTAACACTATCCCGGGTTCCTTCGATGACAGCCTTGTTGCACGAGTGGTATCGTGCGGGCTGGATA
CGGGTCGGAAACCGGAATTAG

Upstream 100 bases:

>100_bases
ATCAGATTGCCCTGTGCGTCCGACAGCTTGTAAGTGACCGACACGACGGTGTTTTTTGCGATTTTCATCCAATTCTCCCA
AATACAAGTCTCATTATACG

Downstream 100 bases:

>100_bases
TGTGAGTCGCCCCGTATGCCCGTACAGATCAAATTCTGTATGGGAAAGACAACGTATTGACCCCGCATTTGTCGACGGTC
GATAGGAAAGTGCATATAAT

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MRNRSQAEPRDTAAAPLGAPPSDLPTPLLGGLTPAQFMRGYWQKKPLLIRQAIPGVVSPVTRDALFELAADYDAESRLIT
HFRNKWQLAHGPFEPDALPAVTRKSWTLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFL
LQVEGRRRWRVGAQKDLSLQPDVPLKILENFEPSDEWVLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSAGELGAQF
LYYLAERGGLRDAGGDDIYRDPKQPAVDAPAQLPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKSNVVFDPPERPLS
EAAFVTQASRRGVRLDRRAALMYNARSYFINGEEGPLAEAEEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWI
RVGNRN

Sequences:

>Translated_406_residues
MRNRSQAEPRDTAAAPLGAPPSDLPTPLLGGLTPAQFMRGYWQKKPLLIRQAIPGVVSPVTRDALFELAADYDAESRLIT
HFRNKWQLAHGPFEPDALPAVTRKSWTLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFL
LQVEGRRRWRVGAQKDLSLQPDVPLKILENFEPSDEWVLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSAGELGAQF
LYYLAERGGLRDAGGDDIYRDPKQPAVDAPAQLPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKSNVVFDPPERPLS
EAAFVTQASRRGVRLDRRAALMYNARSYFINGEEGPLAEAEEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWI
RVGNRN
>Mature_406_residues
MRNRSQAEPRDTAAAPLGAPPSDLPTPLLGGLTPAQFMRGYWQKKPLLIRQAIPGVVSPVTRDALFELAADYDAESRLIT
HFRNKWQLAHGPFEPDALPAVTRKSWTLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFL
LQVEGRRRWRVGAQKDLSLQPDVPLKILENFEPSDEWVLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSAGELGAQF
LYYLAERGGLRDAGGDDIYRDPKQPAVDAPAQLPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKSNVVFDPPERPLS
EAAFVTQASRRGVRLDRRAALMYNARSYFINGEEGPLAEAEEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWI
RVGNRN

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=368, Percent_Identity=33.9673913043478, Blast_Score=198, Evalue=5e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 45495; Mature: 45495

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRSQAEPRDTAAAPLGAPPSDLPTPLLGGLTPAQFMRGYWQKKPLLIRQAIPGVVSPV
CCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCHHHHHCCHHHHHH
TRDALFELAADYDAESRLITHFRNKWQLAHGPFEPDALPAVTRKSWTLLVQGLDLHVDAA
HHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCCCCCCHHHHCCEEEEEECCCCHHHHH
RALLDRFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVEGRRRWRVGAQKDLSLQ
HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCC
PDVPLKILENFEPSDEWVLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSAGELGAQF
CCCCHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
LYYLAERGGLRDAGGDDIYRDPKQPAVDAPAQLPPAMVERVAEIVDAIRWRKRDVAEFLG
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CYLSEPKSNVVFDPPERPLSEAAFVTQASRRGVRLDRRAALMYNARSYFINGEEGPLAEA
HHHCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHEEECCEEEEECCCCCCHHH
EEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWIRVGNRN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCC
>Mature Secondary Structure
MRNRSQAEPRDTAAAPLGAPPSDLPTPLLGGLTPAQFMRGYWQKKPLLIRQAIPGVVSPV
CCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCHHHHHCCHHHHHH
TRDALFELAADYDAESRLITHFRNKWQLAHGPFEPDALPAVTRKSWTLLVQGLDLHVDAA
HHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCCCCCCHHHHCCEEEEEECCCCHHHHH
RALLDRFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVEGRRRWRVGAQKDLSLQ
HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCC
PDVPLKILENFEPSDEWVLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSAGELGAQF
CCCCHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
LYYLAERGGLRDAGGDDIYRDPKQPAVDAPAQLPPAMVERVAEIVDAIRWRKRDVAEFLG
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CYLSEPKSNVVFDPPERPLSEAAFVTQASRRGVRLDRRAALMYNARSYFINGEEGPLAEA
HHHCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHEEECCEEEEECCCCCCHHH
EEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWIRVGNRN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]