| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116690110
Identifier: 116690110
GI number: 116690110
Start: 2321182
End: 2322429
Strand: Direct
Name: 116690110
Synonym: Bcen2424_2089
Alternate gene names: NA
Gene position: 2321182-2322429 (Clockwise)
Preceding gene: 116690109
Following gene: 116690112
Centisome position: 66.63
GC content: 70.03
Gene sequence:
>1248_bases ATGCCGCGGGGCCTGCCGGCCCGCGCCGCCGCCGCGCTCGTCGCGGCGGCGCTAGCGCTGGCGCAGGCCGATGCACTGGC CGCGCCGCCCAAGCGCAGCGCAGCGCCTTACTCGTTCGCGGTCGTGTCGGGCGTCATCAATGCTCCGGCGGACGAACCGG CTGCGCAGCGGCTGCTCGATGCGATCGCACGCGAGCGCAATCTCGCGTTCGTCGTCTACGCAGGCGATCTCAAAGGCTCG AAGGAAGCATGCCGCGACGCGCTGTATTCGCAGCGCGGGGCGATCCTGGATGCGGCGCGCGTGCCGCTCGTGTTCATTCC CGGCCACGACGACTGGATCGCCTGCAACACCGCGGCCGGCGGCGGCTACGACCCGGTCGAGCGGCTCGACTTCCTGCGGC AGACGCTGCTTGCCGATTCGGCACTGCCCGACCCCGGTGCACTGCAGATCACGCGGGAGAGCGAAGTCGCACGGTTCCGG CCGTATCGCGAGAACGCACGCTGGATGCGCGACGACATCGTGTACGTCGCACTCAATGCGCCGGCGCCGAACAACCATTA TTTGACCGCGGGCGGCCGCAACGGCGAATTCGAGGACCGCATCATCGCGAACGGCTTCTGGATCGATCACGCGGCCGAGT ATGCGAAGCGGCGCGAAGCGCGCGCGATGGTCGTGATGTTCGAAGGCGATCCGCAGTTCGAGCGCTATGAACGCGCGGAA CGCTTTGCCTGGCTGCGTTTCAACCGGCCGCGCGTGCGCGACGGCTTCCGCGAGCTGAAACGAACGTTGGTGAAGGCGGC GACGACGTTCCGCGGGCCCATTCTGGTGATGCACGCGAGCGGCGAACCGCTGCCGAACGGCTTTCTGATCGACCGTCCGC TGCACGCCGACGACGGTGAGTTGGTAGGAAACGTCACGCGCGTCGCGATCGGACCGCGCCATCCGGCGAATCAGTGGGTG AAGGTGAGCGTATCGCCGGCACGGCAGACGATCTTCAACGTCAGCCTGCAGGAGGTGCCGAAGAACCTGCCGGTGCCGCC CACGCTGCCGCTCGTGCCGCGCGACGACGTGCCGCTGCCGCAGATGCCGGAAATCCCCGCGCTGCCGGCGCTGCCCGACG CGTCGTCGGTCGCGCCGCCGTTGCAGGGTGACGGCGCCGCACCAGGCGGCGCGTCGTGGCCGGCCCCGCCCGCCGCATCG GGGCCGGCGCCGGGCCTGCCGGCAAGCTCAGTGCAGCGTACGCCCTGA
Upstream 100 bases:
>100_bases ATCGATCCCGACGATCTGAAGCCGCGCGAGGCGCTCGACCTGTTGTATGAATTGCGCACGCTGGTCCGGTCGCACGATGC CGACGGGCACGCGTAAGCGC
Downstream 100 bases:
>100_bases CGGCGCTTCGCCGTCTTCGTCGTCATCCTCGTCGACGATCTCGAGCCCTTCCGCGCCATGCGCGTGCTCGTGCTCGATTT CGTCTTCGGTGGCTTCGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MPRGLPARAAAALVAAALALAQADALAAPPKRSAAPYSFAVVSGVINAPADEPAAQRLLDAIARERNLAFVVYAGDLKGS KEACRDALYSQRGAILDAARVPLVFIPGHDDWIACNTAAGGGYDPVERLDFLRQTLLADSALPDPGALQITRESEVARFR PYRENARWMRDDIVYVALNAPAPNNHYLTAGGRNGEFEDRIIANGFWIDHAAEYAKRREARAMVVMFEGDPQFERYERAE RFAWLRFNRPRVRDGFRELKRTLVKAATTFRGPILVMHASGEPLPNGFLIDRPLHADDGELVGNVTRVAIGPRHPANQWV KVSVSPARQTIFNVSLQEVPKNLPVPPTLPLVPRDDVPLPQMPEIPALPALPDASSVAPPLQGDGAAPGGASWPAPPAAS GPAPGLPASSVQRTP
Sequences:
>Translated_415_residues MPRGLPARAAAALVAAALALAQADALAAPPKRSAAPYSFAVVSGVINAPADEPAAQRLLDAIARERNLAFVVYAGDLKGS KEACRDALYSQRGAILDAARVPLVFIPGHDDWIACNTAAGGGYDPVERLDFLRQTLLADSALPDPGALQITRESEVARFR PYRENARWMRDDIVYVALNAPAPNNHYLTAGGRNGEFEDRIIANGFWIDHAAEYAKRREARAMVVMFEGDPQFERYERAE RFAWLRFNRPRVRDGFRELKRTLVKAATTFRGPILVMHASGEPLPNGFLIDRPLHADDGELVGNVTRVAIGPRHPANQWV KVSVSPARQTIFNVSLQEVPKNLPVPPTLPLVPRDDVPLPQMPEIPALPALPDASSVAPPLQGDGAAPGGASWPAPPAAS GPAPGLPASSVQRTP >Mature_414_residues PRGLPARAAAALVAAALALAQADALAAPPKRSAAPYSFAVVSGVINAPADEPAAQRLLDAIARERNLAFVVYAGDLKGSK EACRDALYSQRGAILDAARVPLVFIPGHDDWIACNTAAGGGYDPVERLDFLRQTLLADSALPDPGALQITRESEVARFRP YRENARWMRDDIVYVALNAPAPNNHYLTAGGRNGEFEDRIIANGFWIDHAAEYAKRREARAMVVMFEGDPQFERYERAER FAWLRFNRPRVRDGFRELKRTLVKAATTFRGPILVMHASGEPLPNGFLIDRPLHADDGELVGNVTRVAIGPRHPANQWVK VSVSPARQTIFNVSLQEVPKNLPVPPTLPLVPRDDVPLPQMPEIPALPALPDASSVAPPLQGDGAAPGGASWPAPPAASG PAPGLPASSVQRTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44717; Mature: 44586
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRGLPARAAAALVAAALALAQADALAAPPKRSAAPYSFAVVSGVINAPADEPAAQRLLD CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH AIARERNLAFVVYAGDLKGSKEACRDALYSQRGAILDAARVPLVFIPGHDDWIACNTAAG HHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCEEEECCCCCEEEEECCCC GGYDPVERLDFLRQTLLADSALPDPGALQITRESEVARFRPYRENARWMRDDIVYVALNA CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCCHHCCCEEECCEEEEEEEC PAPNNHYLTAGGRNGEFEDRIIANGFWIDHAAEYAKRREARAMVVMFEGDPQFERYERAE CCCCCCEEEECCCCCCCCCEEEECCEEHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHH RFAWLRFNRPRVRDGFRELKRTLVKAATTFRGPILVMHASGEPLPNGFLIDRPLHADDGE HEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCCCCH LVGNVTRVAIGPRHPANQWVKVSVSPARQTIFNVSLQEVPKNLPVPPTLPLVPRDDVPLP HHCCEEEEEECCCCCCCCEEEEEECHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCC QMPEIPALPALPDASSVAPPLQGDGAAPGGASWPAPPAASGPAPGLPASSVQRTP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PRGLPARAAAALVAAALALAQADALAAPPKRSAAPYSFAVVSGVINAPADEPAAQRLLD CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH AIARERNLAFVVYAGDLKGSKEACRDALYSQRGAILDAARVPLVFIPGHDDWIACNTAAG HHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCEEEECCCCCEEEEECCCC GGYDPVERLDFLRQTLLADSALPDPGALQITRESEVARFRPYRENARWMRDDIVYVALNA CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCCHHCCCEEECCEEEEEEEC PAPNNHYLTAGGRNGEFEDRIIANGFWIDHAAEYAKRREARAMVVMFEGDPQFERYERAE CCCCCCEEEECCCCCCCCCEEEECCEEHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHH RFAWLRFNRPRVRDGFRELKRTLVKAATTFRGPILVMHASGEPLPNGFLIDRPLHADDGE HEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCCCCH LVGNVTRVAIGPRHPANQWVKVSVSPARQTIFNVSLQEVPKNLPVPPTLPLVPRDDVPLP HHCCEEEEEECCCCCCCCEEEEEECHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCC QMPEIPALPALPDASSVAPPLQGDGAAPGGASWPAPPAASGPAPGLPASSVQRTP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA