| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690072
Identifier: 116690072
GI number: 116690072
Start: 2275780
End: 2276547
Strand: Direct
Name: 116690072
Synonym: Bcen2424_2051
Alternate gene names: NA
Gene position: 2275780-2276547 (Clockwise)
Preceding gene: 116690069
Following gene: 116690073
Centisome position: 65.32
GC content: 70.83
Gene sequence:
>768_bases ATGTCGGCCACAACGACACTCTCCTCTCCCGACGCCATCCTCTTCGACGCATTCGGCACGTTGTTCGACGTGCGTGCCGT GCTGGCCGCGGCTGAGCAGATGTTTCCCGGGCACGGGGAACGGTTGTCGCAGCTGTGGCGACGCAAGCAGATCGAATACT CGCAGCTGCGCACGCTCGCCGATCCGGCCGGCGCGCACTATCGCCCGTTCCGGGACATCACGCTCGATGCGCTGCGGTTC GCCGCGCGCCGGCTCGGGCTCGCGCTGAACGGCGCGGCCGAGAAGCGCTTGATGGACGAATACGCGTGCCTGTCGACCTA TCCCGATACGGTGCCCGCGTTGCGCAAGCTGCGTGCGCTCGACCCGCGCCCGCCGCTCGCGATCCTGTCGAACGGCACCC CGCAGATGCTCGACATCGCGATCAAGAGCGCCGGCATGTCCGGCCTGTTCGATCGCGTGCTGTCGGCCGACACCGTGCGC GCGTACAAACCGAGCCCGGCCGCCTACGCGCTCGGCACCGCCGCGTTCGGGGCGAACCCGCGCGACGTCGTGTTCGTGTC GTCGAACGCGTGGGACGTCGCCGGCGCCACCTGGTTCGGCTACACGACGTTCTGGCTCAACCGCACGGGCGCGCCCGCCG AGGAACTCGGCGCGCCGCCCGACGGCACCGGCACCGGCATGGCCGACCTGCTCGCCTTCCTCGCCACACCCACCCCGGCT CCGTCCGGCAGACCCGCAAACCGCACGCGCCCCGGCCCGGGTGCATGA
Upstream 100 bases:
>100_bases GGTATATGAAAGTAAAAGATCAAGTGATATTTAGCGTCTTTTTTAGCACCTTCGATCACGAATAGAATCGACCCGACCTC TGAAACTGGAGCGCAAGGCT
Downstream 100 bases:
>100_bases CGCTCGCAGCTGCCGCCTTCCCCCTTCACCGAAACCGCAACTGACCGACCAAGGAGATGAGACTCATGAGCACCCCGATC ACGCTGCCGCAAGGCATGAC
Product: haloacid dehalogenase, type II
Products: NA
Alternate protein names: Cryptic L-isomer-specific dehalogenase; DhlS5I; Halocarboxylic acid halidohydrolase; L-2-haloacid dehalogenase; L-DEX [H]
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MSATTTLSSPDAILFDAFGTLFDVRAVLAAAEQMFPGHGERLSQLWRRKQIEYSQLRTLADPAGAHYRPFRDITLDALRF AARRLGLALNGAAEKRLMDEYACLSTYPDTVPALRKLRALDPRPPLAILSNGTPQMLDIAIKSAGMSGLFDRVLSADTVR AYKPSPAAYALGTAAFGANPRDVVFVSSNAWDVAGATWFGYTTFWLNRTGAPAEELGAPPDGTGTGMADLLAFLATPTPA PSGRPANRTRPGPGA
Sequences:
>Translated_255_residues MSATTTLSSPDAILFDAFGTLFDVRAVLAAAEQMFPGHGERLSQLWRRKQIEYSQLRTLADPAGAHYRPFRDITLDALRF AARRLGLALNGAAEKRLMDEYACLSTYPDTVPALRKLRALDPRPPLAILSNGTPQMLDIAIKSAGMSGLFDRVLSADTVR AYKPSPAAYALGTAAFGANPRDVVFVSSNAWDVAGATWFGYTTFWLNRTGAPAEELGAPPDGTGTGMADLLAFLATPTPA PSGRPANRTRPGPGA >Mature_254_residues SATTTLSSPDAILFDAFGTLFDVRAVLAAAEQMFPGHGERLSQLWRRKQIEYSQLRTLADPAGAHYRPFRDITLDALRFA ARRLGLALNGAAEKRLMDEYACLSTYPDTVPALRKLRALDPRPPLAILSNGTPQMLDIAIKSAGMSGLFDRVLSADTVRA YKPSPAAYALGTAAFGANPRDVVFVSSNAWDVAGATWFGYTTFWLNRTGAPAEELGAPPDGTGTGMADLLAFLATPTPAP SGRPANRTRPGPGA
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. S-2- haloalkanoic acid dehalogenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006388 - InterPro: IPR006328 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: =3.8.1.2 [H]
Molecular weight: Translated: 27241; Mature: 27110
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATTTLSSPDAILFDAFGTLFDVRAVLAAAEQMFPGHGERLSQLWRRKQIEYSQLRTLA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH DPAGAHYRPFRDITLDALRFAARRLGLALNGAAEKRLMDEYACLSTYPDTVPALRKLRAL CCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHC DPRPPLAILSNGTPQMLDIAIKSAGMSGLFDRVLSADTVRAYKPSPAAYALGTAAFGANP CCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC RDVVFVSSNAWDVAGATWFGYTTFWLNRTGAPAEELGAPPDGTGTGMADLLAFLATPTPA CEEEEEECCCCCCCCCHHHHHEEEEEECCCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCC PSGRPANRTRPGPGA CCCCCCCCCCCCCCC >Mature Secondary Structure SATTTLSSPDAILFDAFGTLFDVRAVLAAAEQMFPGHGERLSQLWRRKQIEYSQLRTLA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH DPAGAHYRPFRDITLDALRFAARRLGLALNGAAEKRLMDEYACLSTYPDTVPALRKLRAL CCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHC DPRPPLAILSNGTPQMLDIAIKSAGMSGLFDRVLSADTVRAYKPSPAAYALGTAAFGANP CCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC RDVVFVSSNAWDVAGATWFGYTTFWLNRTGAPAEELGAPPDGTGTGMADLLAFLATPTPA CEEEEEECCCCCCCCCHHHHHEEEEEECCCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCC PSGRPANRTRPGPGA CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA