| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is yheS [H]
Identifier: 116690057
GI number: 116690057
Start: 2259208
End: 2261139
Strand: Direct
Name: yheS [H]
Synonym: Bcen2424_2036
Alternate gene names: 116690057
Gene position: 2259208-2261139 (Clockwise)
Preceding gene: 116690055
Following gene: 116690061
Centisome position: 64.85
GC content: 66.77
Gene sequence:
>1932_bases GTGATCCGTTTCAATCAGTTCAGCCTTGCGCGCGGCACCAAGCCGCTGTTCGAGTCGACCTCGTTCGTGCTCAATCCCGG CGAGAAAGCCGGCCTGATCGGCGCGAACGGCGCCGGCAAGTCGACGCTGTTTTCCGTCCTGCGCGGCGAGCTGCATTCCG ACGGAGGCGATTTCTCGATGCCGCCGTCGTGGCGGATCGCCCACGTGTCGCAGGAAACGCCCGCGGTCGACCGCTCGGCG CTCGACTACACGCTCGACGGCGATACCGCGCTGCGCGAGATCGAGGCCCGCATCGCCGCCGCGTCGGCCGCGCATGACGG CGCCGCCGAAGCCGACGCGCACGCGGCATTCGCCGATGCCGACGGCTACACCGCGCCGGCCCGCGCCGAAGCGCTGCTGC TCGGCCTAGGCTTCACGCTCGCGCAAACGCGCGAATCCGTCGCGAGCTTCTCCGGCGGCTGGCGCATGCGCCTGAACCTC GCGCAGGCGCTGATGTGCCGCTCCGACCTGCTGCTGCTCGACGAACCGACGAACCACCTCGACCTCGACGCGATCGTCTG GCTCGAAGACTGGCTGCATCGCTACCCCGGCACGCTCGTCGTGATTTCGCACGACCGCGAATTCCTCGACTCGATCTGCA ACGTCACGCTGCATCTGGAAAACCGCCAGGTGAAGCGCTACGGCGGCAACTACTCGCAGTTCGAAGTATTACGCGCTCAG CAACTGGCGCTGCAGCAAAGCGCGTACGAAAAGCAGCAGAAGACGATCGAGCACCTGCAGAGCTTCGTCGACCGCTTCAA GGCCAAGGCGACCAAGGCCAAGCAGGCGCAAAGCCGGATGAAGGCGCTCGAGAAGATGGAGTTGATCGCGCCCGCGCACA TCGCGTCGCCGTTCACGTTCGAATTCCGCACGCCCGATGCCGCGCCGAACCCGATGATGGTGATGGAGGACGTCCGCTGC GGCTATCACGCCGACGACGGAACGGACATCCCGATCGTCGAGCGCGTCGCGCTGTCGATCCAGAACGGCCAGCGTATCGG CCTGTTGGGTGCCAACGGCCAGGGCAAGTCGACGCTGATCAAGACACTGGCCGGCACGCTCGCGCCGCTGTCGGGGCACG TGCGCGACGGCAAGGGGCTGACGATCGGCTATTTCGCGCAGCACCAGCTCGAAACGCTGCGCGAAGACGATTCGCCGCTC GCGCATCTGGCACGGCTTGCGCCCGACACGCGCGAGCAGGAACTGCGCGACTTCCTCGGCGGCTTCAATTTCTCGGGCGA CATGGCGACCAGCCCGGTCGGGCCGTTCTCGGGCGGCGAAAAAGCCCGCCTCGCGCTGGCGCTGATCATCTGGCAGAAGC CGAACCTGCTGCTGCTCGACGAACCGACGAACCACCTCGACCTCGAAACGCGCCACGCGCTGACGATGGCGCTCGCGCAA TTCGAAGGCACGCTGATCCTCGTGTCGCACGATCGTCACCTGCTGCGCGCGACGACCGATCAGTTCATGCTGGTCGCGAA GCACCGGCTGCAGCCGTTCGACGGCGACCTCGACGACTACCGCGACTGGCTGCTGCAGCACGCAGCCGAGCAGCGCGCGG CCGCGAAAGCCGACAGCGCGGCAGCCGCGGGCGCCGATCCGGGCGTCAACCGCAAGGATCAGAAGCGTCAGGCGGCCGAG GAACGCCAACGGCTGTCCCAGTTGAAGAAGCCGCTGCAGAACCGCATCACGAAGCTCGAGAAGGAAATGGAAGCACTGCA CGCCGAAAAGGCGCGCCTCGACGCGTTCGTCGCCGATCCGGCGAGCTACGAAGCCGCGCGCAAGACGGAACTGACCGACG CGATCCGCAAGCTCGGCGAGGTCACGACCCGGCTCGAAACGGTCGAGGCGGACTGGCTCGCCGTGCAGGAAGAACTCGAG CAGATCGGCTGA
Upstream 100 bases:
>100_bases TCTAGGCGAAATTGCGCCGTTGCGGCATCCGCCGAACGGCCGATGCCCGGCGCGACCGGCGCGCGGTCTAGAATAGCGGT TTTCGCCAGCCATTTCCGCC
Downstream 100 bases:
>100_bases ACGGCGGCCGTCGGGGCCGTCGGCGATGAGCGCGTCATCGGCGACGTAGCGCGTCGAGGCGTCGAGGCGTCGGGCATCGA CGCCCCATTAATCCGCCCCG
Product: ABC transporter related
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 643; Mature: 643
Protein sequence:
>643_residues MIRFNQFSLARGTKPLFESTSFVLNPGEKAGLIGANGAGKSTLFSVLRGELHSDGGDFSMPPSWRIAHVSQETPAVDRSA LDYTLDGDTALREIEARIAAASAAHDGAAEADAHAAFADADGYTAPARAEALLLGLGFTLAQTRESVASFSGGWRMRLNL AQALMCRSDLLLLDEPTNHLDLDAIVWLEDWLHRYPGTLVVISHDREFLDSICNVTLHLENRQVKRYGGNYSQFEVLRAQ QLALQQSAYEKQQKTIEHLQSFVDRFKAKATKAKQAQSRMKALEKMELIAPAHIASPFTFEFRTPDAAPNPMMVMEDVRC GYHADDGTDIPIVERVALSIQNGQRIGLLGANGQGKSTLIKTLAGTLAPLSGHVRDGKGLTIGYFAQHQLETLREDDSPL AHLARLAPDTREQELRDFLGGFNFSGDMATSPVGPFSGGEKARLALALIIWQKPNLLLLDEPTNHLDLETRHALTMALAQ FEGTLILVSHDRHLLRATTDQFMLVAKHRLQPFDGDLDDYRDWLLQHAAEQRAAAKADSAAAAGADPGVNRKDQKRQAAE ERQRLSQLKKPLQNRITKLEKEMEALHAEKARLDAFVADPASYEAARKTELTDAIRKLGEVTTRLETVEADWLAVQEELE QIG
Sequences:
>Translated_643_residues MIRFNQFSLARGTKPLFESTSFVLNPGEKAGLIGANGAGKSTLFSVLRGELHSDGGDFSMPPSWRIAHVSQETPAVDRSA LDYTLDGDTALREIEARIAAASAAHDGAAEADAHAAFADADGYTAPARAEALLLGLGFTLAQTRESVASFSGGWRMRLNL AQALMCRSDLLLLDEPTNHLDLDAIVWLEDWLHRYPGTLVVISHDREFLDSICNVTLHLENRQVKRYGGNYSQFEVLRAQ QLALQQSAYEKQQKTIEHLQSFVDRFKAKATKAKQAQSRMKALEKMELIAPAHIASPFTFEFRTPDAAPNPMMVMEDVRC GYHADDGTDIPIVERVALSIQNGQRIGLLGANGQGKSTLIKTLAGTLAPLSGHVRDGKGLTIGYFAQHQLETLREDDSPL AHLARLAPDTREQELRDFLGGFNFSGDMATSPVGPFSGGEKARLALALIIWQKPNLLLLDEPTNHLDLETRHALTMALAQ FEGTLILVSHDRHLLRATTDQFMLVAKHRLQPFDGDLDDYRDWLLQHAAEQRAAAKADSAAAAGADPGVNRKDQKRQAAE ERQRLSQLKKPLQNRITKLEKEMEALHAEKARLDAFVADPASYEAARKTELTDAIRKLGEVTTRLETVEADWLAVQEELE QIG >Mature_643_residues MIRFNQFSLARGTKPLFESTSFVLNPGEKAGLIGANGAGKSTLFSVLRGELHSDGGDFSMPPSWRIAHVSQETPAVDRSA LDYTLDGDTALREIEARIAAASAAHDGAAEADAHAAFADADGYTAPARAEALLLGLGFTLAQTRESVASFSGGWRMRLNL AQALMCRSDLLLLDEPTNHLDLDAIVWLEDWLHRYPGTLVVISHDREFLDSICNVTLHLENRQVKRYGGNYSQFEVLRAQ QLALQQSAYEKQQKTIEHLQSFVDRFKAKATKAKQAQSRMKALEKMELIAPAHIASPFTFEFRTPDAAPNPMMVMEDVRC GYHADDGTDIPIVERVALSIQNGQRIGLLGANGQGKSTLIKTLAGTLAPLSGHVRDGKGLTIGYFAQHQLETLREDDSPL AHLARLAPDTREQELRDFLGGFNFSGDMATSPVGPFSGGEKARLALALIIWQKPNLLLLDEPTNHLDLETRHALTMALAQ FEGTLILVSHDRHLLRATTDQFMLVAKHRLQPFDGDLDDYRDWLLQHAAEQRAAAKADSAAAAGADPGVNRKDQKRQAAE ERQRLSQLKKPLQNRITKLEKEMEALHAEKARLDAFVADPASYEAARKTELTDAIRKLGEVTTRLETVEADWLAVQEELE QIG
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=534, Percent_Identity=38.7640449438202, Blast_Score=355, Evalue=7e-98, Organism=Homo sapiens, GI27881506, Length=531, Percent_Identity=37.0998116760829, Blast_Score=326, Evalue=5e-89, Organism=Homo sapiens, GI10947137, Length=531, Percent_Identity=37.0998116760829, Blast_Score=325, Evalue=9e-89, Organism=Homo sapiens, GI10947135, Length=545, Percent_Identity=33.0275229357798, Blast_Score=256, Evalue=4e-68, Organism=Homo sapiens, GI69354671, Length=545, Percent_Identity=33.0275229357798, Blast_Score=256, Evalue=5e-68, Organism=Homo sapiens, GI150417984, Length=202, Percent_Identity=31.1881188118812, Blast_Score=68, Evalue=3e-11, Organism=Escherichia coli, GI1789751, Length=642, Percent_Identity=53.8940809968847, Blast_Score=707, Evalue=0.0, Organism=Escherichia coli, GI1787041, Length=531, Percent_Identity=37.0998116760829, Blast_Score=337, Evalue=2e-93, Organism=Escherichia coli, GI2367384, Length=530, Percent_Identity=30.7547169811321, Blast_Score=218, Evalue=7e-58, Organism=Escherichia coli, GI1787182, Length=637, Percent_Identity=29.6703296703297, Blast_Score=214, Evalue=1e-56, Organism=Escherichia coli, GI1788165, Length=183, Percent_Identity=32.7868852459016, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI87081782, Length=536, Percent_Identity=24.6268656716418, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=24.5614035087719, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1787758, Length=195, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=31.1557788944724, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786253, Length=197, Percent_Identity=28.4263959390863, Blast_Score=64, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17553372, Length=534, Percent_Identity=36.1423220973783, Blast_Score=332, Evalue=5e-91, Organism=Caenorhabditis elegans, GI17555318, Length=530, Percent_Identity=34.9056603773585, Blast_Score=320, Evalue=1e-87, Organism=Caenorhabditis elegans, GI17559834, Length=566, Percent_Identity=31.6254416961131, Blast_Score=288, Evalue=6e-78, Organism=Caenorhabditis elegans, GI71992285, Length=185, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6321121, Length=556, Percent_Identity=33.8129496402878, Blast_Score=322, Evalue=1e-88, Organism=Saccharomyces cerevisiae, GI6320874, Length=537, Percent_Identity=32.2160148975791, Blast_Score=288, Evalue=2e-78, Organism=Saccharomyces cerevisiae, GI6324314, Length=386, Percent_Identity=31.3471502590674, Blast_Score=162, Evalue=1e-40, Organism=Saccharomyces cerevisiae, GI6325030, Length=391, Percent_Identity=31.4578005115089, Blast_Score=157, Evalue=5e-39, Organism=Saccharomyces cerevisiae, GI6323278, Length=386, Percent_Identity=29.0155440414508, Blast_Score=149, Evalue=1e-36, Organism=Drosophila melanogaster, GI24666836, Length=528, Percent_Identity=37.5, Blast_Score=370, Evalue=1e-102, Organism=Drosophila melanogaster, GI24642252, Length=546, Percent_Identity=37.5457875457875, Blast_Score=344, Evalue=1e-94, Organism=Drosophila melanogaster, GI18859989, Length=546, Percent_Identity=37.5457875457875, Blast_Score=344, Evalue=1e-94, Organism=Drosophila melanogaster, GI24641342, Length=546, Percent_Identity=32.7838827838828, Blast_Score=302, Evalue=4e-82,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 70899; Mature: 70899
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRFNQFSLARGTKPLFESTSFVLNPGEKAGLIGANGAGKSTLFSVLRGELHSDGGDFSM CCEECCCHHCCCCCHHHHCCCEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCC PPSWRIAHVSQETPAVDRSALDYTLDGDTALREIEARIAAASAAHDGAAEADAHAAFADA CCCCEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC DGYTAPARAEALLLGLGFTLAQTRESVASFSGGWRMRLNLAQALMCRSDLLLLDEPTNHL CCCCCCHHHHEEHHHCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCEEEEECCCCCC DLDAIVWLEDWLHRYPGTLVVISHDREFLDSICNVTLHLENRQVKRYGGNYSQFEVLRAQ CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEECCCHHHHHCCCHHHHHHHHHH QLALQQSAYEKQQKTIEHLQSFVDRFKAKATKAKQAQSRMKALEKMELIAPAHIASPFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEE EFRTPDAAPNPMMVMEDVRCGYHADDGTDIPIVERVALSIQNGQRIGLLGANGQGKSTLI EEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHH KTLAGTLAPLSGHVRDGKGLTIGYFAQHQLETLREDDSPLAHLARLAPDTREQELRDFLG HHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHC GFNFSGDMATSPVGPFSGGEKARLALALIIWQKPNLLLLDEPTNHLDLETRHALTMALAQ CCCCCCCCCCCCCCCCCCCCHHEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHH FEGTLILVSHDRHLLRATTDQFMLVAKHRLQPFDGDLDDYRDWLLQHAAEQRAAAKADSA HCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH AAAGADPGVNRKDQKRQAAEERQRLSQLKKPLQNRITKLEKEMEALHAEKARLDAFVADP HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ASYEAARKTELTDAIRKLGEVTTRLETVEADWLAVQEELEQIG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIRFNQFSLARGTKPLFESTSFVLNPGEKAGLIGANGAGKSTLFSVLRGELHSDGGDFSM CCEECCCHHCCCCCHHHHCCCEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCC PPSWRIAHVSQETPAVDRSALDYTLDGDTALREIEARIAAASAAHDGAAEADAHAAFADA CCCCEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC DGYTAPARAEALLLGLGFTLAQTRESVASFSGGWRMRLNLAQALMCRSDLLLLDEPTNHL CCCCCCHHHHEEHHHCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCEEEEECCCCCC DLDAIVWLEDWLHRYPGTLVVISHDREFLDSICNVTLHLENRQVKRYGGNYSQFEVLRAQ CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEECCCHHHHHCCCHHHHHHHHHH QLALQQSAYEKQQKTIEHLQSFVDRFKAKATKAKQAQSRMKALEKMELIAPAHIASPFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEE EFRTPDAAPNPMMVMEDVRCGYHADDGTDIPIVERVALSIQNGQRIGLLGANGQGKSTLI EEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHH KTLAGTLAPLSGHVRDGKGLTIGYFAQHQLETLREDDSPLAHLARLAPDTREQELRDFLG HHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHC GFNFSGDMATSPVGPFSGGEKARLALALIIWQKPNLLLLDEPTNHLDLETRHALTMALAQ CCCCCCCCCCCCCCCCCCCCHHEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHH FEGTLILVSHDRHLLRATTDQFMLVAKHRLQPFDGDLDDYRDWLLQHAAEQRAAAKADSA HCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH AAAGADPGVNRKDQKRQAAEERQRLSQLKKPLQNRITKLEKEMEALHAEKARLDAFVADP HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ASYEAARKTELTDAIRKLGEVTTRLETVEADWLAVQEELEQIG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]