Click here to switch to the map view.

The map label for this gene is dapD

Identifier: 116690051

GI number: 116690051

Start: 2253625

End: 2254452

Strand: Direct

Name: dapD

Synonym: Bcen2424_2030

Alternate gene names: 116690051

Gene position: 2253625-2254452 (Clockwise)

Preceding gene: 116690050

Following gene: 116690052

Centisome position: 64.69

GC content: 65.34

Gene sequence:

>828_bases
ATGTCGCAACAACTTCAGCAAATCATCGATACCGCCTGGGAAAACCGCGCCGAGCTGTCGCCGAAGGCCGCGCCCGCGGA
CGTCCGCGAAGCCGTCGCTCACGCGATCGAGCAACTCGACAAGGGTGCACTGCGCGTCGCCGAGAAAATCGACGGCAACT
GGACGGTCCACCAGTGGCTGAAGAAGGCCGTGCTGCTGTCGTTCCGCCTGGAGGACAACGCGCCGATGCCGGCCGGCGGC
TACTCGCAGTTCTACGACAAGGTGCCGTCGAAGTTCGCGAACTACACGGCCGAAGACTTCGCCGCGGGCGGCTTCCGCGT
CGTCCCGCCGGCCATCGCGCGCCGCGGCTCGTTCATCGCGAAGAACGTCGTGCTGATGCCGTCGTACACCAACATCGGCG
CGTACGTCGACGAAGGCACGATGGTCGACACGTGGGCCACGGTCGGTTCGTGCGCGCAGATCGGCAAGAACGTGCACCTG
TCGGGCGGCGTCGGTATCGGCGGCGTGCTCGAGCCGCTGCAGGCGAATCCGGTCATCATCGAAGACAACTGCTTCATCGG
CGCGCGCTCGGAAGTCGTCGAAGGCGTGATCGTCGAGGAAAACTCGGTGATCTCGATGGGCGTGTACCTCGGCCAGAGCA
CGAAGATCTACGATCGCGAGACGGGCGAAGTCAGCTACGGCCGCATCCCGGCCGGCTCGGTCGTCGTCGCCGGCAACCTG
CCGTCGAAGGACGGTTCGCACAGCCTGTACTGCGCGGTGATCGTCAAGAAGGTCGACGCGAAGACGCGTGCGAAGGTCGG
CCTGAACGAGCTGCTGCGAGGCGACTGA

Upstream 100 bases:

>100_bases
ATGCGTCGAGGGCGCGCAACGCATCGTCGATTTCTGCCGCGCTCTCGCGCGGTAAGACGTCCATCCCGATCAATTCCATC
CATCTCCTGCGAAAACGAAC

Downstream 100 bases:

>100_bases
TGGCAAAGCCGCACACCGTGGTCGTCTACGGCATTCCGAACTGCGACACCGTGAAGAAGGCCCGCGTGTGGCTCGACGAT
CACGGCGTCGAATTCGAGTT

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSQQLQQIIDTAWENRAELSPKAAPADVREAVAHAIEQLDKGALRVAEKIDGNWTVHQWLKKAVLLSFRLEDNAPMPAGG
YSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHL
SGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVSYGRIPAGSVVVAGNL
PSKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD

Sequences:

>Translated_275_residues
MSQQLQQIIDTAWENRAELSPKAAPADVREAVAHAIEQLDKGALRVAEKIDGNWTVHQWLKKAVLLSFRLEDNAPMPAGG
YSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHL
SGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVSYGRIPAGSVVVAGNL
PSKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD
>Mature_274_residues
SQQLQQIIDTAWENRAELSPKAAPADVREAVAHAIEQLDKGALRVAEKIDGNWTVHQWLKKAVLLSFRLEDNAPMPAGGY
SQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLS
GGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVSYGRIPAGSVVVAGNLP
SKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family

Homologues:

Organism=Escherichia coli, GI1786362, Length=271, Percent_Identity=77.4907749077491, Blast_Score=410, Evalue=1e-116,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): DAPD_BURA4 (B1YSH7)

Other databases:

- EMBL:   CP001025
- RefSeq:   YP_001808629.1
- ProteinModelPortal:   B1YSH7
- SMR:   B1YSH7
- GeneID:   6177343
- GenomeReviews:   CP001025_GR
- KEGG:   bac:BamMC406_1931
- HOGENOM:   HBG704071
- OMA:   QWAKKAV
- ProtClustDB:   PRK11830
- BioCyc:   BAMB398577:BAMMC406_1931-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00811
- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004
- Gene3D:   G3DSA:1.10.166.10
- TIGRFAMs:   TIGR00965

Pfam domain/function: SSF51161 Trimer_LpxA_like

EC number: =2.3.1.117

Molecular weight: Translated: 29480; Mature: 29349

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQLQQIIDTAWENRAELSPKAAPADVREAVAHAIEQLDKGALRVAEKIDGNWTVHQWL
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
KKAVLLSFRLEDNAPMPAGGYSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIA
HHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEECCHHHHHCCCEEE
KNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVII
CCEEEECCCCCCCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHCCCCCCCCEEE
EDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVSYGRIPAGSVVVAGNL
ECCCEECCHHHHHCEEEECCCCEEEEEEEECCCCEEEECCCCCEECCCCCCCCEEEECCC
PSKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD
CCCCCCCCEEEEEEEHHHCCHHHHHHCHHHHHCCC
>Mature Secondary Structure 
SQQLQQIIDTAWENRAELSPKAAPADVREAVAHAIEQLDKGALRVAEKIDGNWTVHQWL
CHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
KKAVLLSFRLEDNAPMPAGGYSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIA
HHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEECCHHHHHCCCEEE
KNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVII
CCEEEECCCCCCCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHCCCCCCCCEEE
EDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVSYGRIPAGSVVVAGNL
ECCCEECCHHHHHCEEEECCCCEEEEEEEECCCCEEEECCCCCEECCCCCCCCEEEECCC
PSKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD
CCCCCCCCEEEEEEEHHHCCHHHHHHCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA