| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690013
Identifier: 116690013
GI number: 116690013
Start: 2209057
End: 2209890
Strand: Reverse
Name: 116690013
Synonym: Bcen2424_1992
Alternate gene names: NA
Gene position: 2209890-2209057 (Counterclockwise)
Preceding gene: 116690014
Following gene: 116690012
Centisome position: 63.43
GC content: 74.1
Gene sequence:
>834_bases ATGACACGAACGACGACCGGGGCGAAAGCCGGGCCGATAACCGGCGAGACGGCCCTCGATCCGCGGGCATTCGGCGTGGC GGTCGCGGCCGTGTTCGCGGTCGCCGTGGTGGCGACGCTGGCGCAGCATGCGTCGATGGCCGCGATGGGCGGCGTACCGA TGCCAGGCGGCTGGATGGCCTCGGCCGCCTGGCTGCGGCCGTGCGGGCGAGGCGGCGGGCGCGCATTCGCGACGTTCGCC GGAATGTGGGGCGCGATGACGGTGACGATGATGCTGCCCGTGCTCGCGCCGCAGCTCTGGCATTACCGGCGGCGTATCGG CCCGCAGGCGGCAGCGCGGTCGGCCTGGCTCGTCGTCGTCGCGGGGGCGGGATATTTCTCGGTCTGGATGGCGCTCGGCG CGCTCGTGTTTCCGGCCGGCGCCGTAATGACGACGGCCGCCGCCCGTCTGCCGGCGCTCGCCCGGGCGATGCCGTTCGTG TCCGGCGCCGTCGTGCTGGCCGCGGGCGCGTTGCAATTCTCCGGGTGGAAGGCGCGCCGGCTCGCGTGCTGCCGGCATGC GGAGGCGCACGACGTGCATCGGCCACGGGCGGCGGCCGTTACGGCATGGCGGTACGGCATGCGCGCCGCGATCAGGTGCG GCGCGTGTTGCGGGAACCTGATGGTGGTCGCATTGGCGGCCGGCATGATGGATCTGCGCGTGATGGCCGCCGTGACGGTC GCGATCGCAGCCGAACGTGTTGTGCCGGCCGGCGGGCGCTTCGCGCGGACCGTCGGTTGCGGGGTGGCGGCGGGCGGCAT GGCGATGATCGCCCGTGCCGCCGGGCTGGCGTGA
Upstream 100 bases:
>100_bases GATCGCGCGCCGCGCGGACGCAACGAGGCCGGCCCGTGGTGGCGCCGTCACGACGAGTACGCGCGCGGCTGAGCGCGGTG GCCACGGGCGGGAGCACGCG
Downstream 100 bases:
>100_bases AGCAGGGCTGGCAAGCCGCTTCGGCGGGTCGCCGGGCCGTGCGCGCGGCCGCCGCCGTCGCGGCCGTGTGGCCCCGCCGC GACACGGGCACATGCCGCCG
Product: metal-binding integral membrane protein-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MTRTTTGAKAGPITGETALDPRAFGVAVAAVFAVAVVATLAQHASMAAMGGVPMPGGWMASAAWLRPCGRGGGRAFATFA GMWGAMTVTMMLPVLAPQLWHYRRRIGPQAAARSAWLVVVAGAGYFSVWMALGALVFPAGAVMTTAAARLPALARAMPFV SGAVVLAAGALQFSGWKARRLACCRHAEAHDVHRPRAAAVTAWRYGMRAAIRCGACCGNLMVVALAAGMMDLRVMAAVTV AIAAERVVPAGGRFARTVGCGVAAGGMAMIARAAGLA
Sequences:
>Translated_277_residues MTRTTTGAKAGPITGETALDPRAFGVAVAAVFAVAVVATLAQHASMAAMGGVPMPGGWMASAAWLRPCGRGGGRAFATFA GMWGAMTVTMMLPVLAPQLWHYRRRIGPQAAARSAWLVVVAGAGYFSVWMALGALVFPAGAVMTTAAARLPALARAMPFV SGAVVLAAGALQFSGWKARRLACCRHAEAHDVHRPRAAAVTAWRYGMRAAIRCGACCGNLMVVALAAGMMDLRVMAAVTV AIAAERVVPAGGRFARTVGCGVAAGGMAMIARAAGLA >Mature_276_residues TRTTTGAKAGPITGETALDPRAFGVAVAAVFAVAVVATLAQHASMAAMGGVPMPGGWMASAAWLRPCGRGGGRAFATFAG MWGAMTVTMMLPVLAPQLWHYRRRIGPQAAARSAWLVVVAGAGYFSVWMALGALVFPAGAVMTTAAARLPALARAMPFVS GAVVLAAGALQFSGWKARRLACCRHAEAHDVHRPRAAAVTAWRYGMRAAIRCGACCGNLMVVALAAGMMDLRVMAAVTVA IAAERVVPAGGRFARTVGCGVAAGGMAMIARAAGLA
Specific function: Unknown
COG id: COG5486
COG function: function code S; Predicted metal-binding integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28224; Mature: 28093
Theoretical pI: Translated: 12.13; Mature: 12.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 6.9 %Met (Translated Protein) 9.4 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 6.5 %Met (Mature Protein) 9.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTTTGAKAGPITGETALDPRAFGVAVAAVFAVAVVATLAQHASMAAMGGVPMPGGWMA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH SAAWLRPCGRGGGRAFATFAGMWGAMTVTMMLPVLAPQLWHYRRRIGPQAAARSAWLVVV HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEEEE AGAGYFSVWMALGALVFPAGAVMTTAAARLPALARAMPFVSGAVVLAAGALQFSGWKARR ECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LACCRHAEAHDVHRPRAAAVTAWRYGMRAAIRCGACCGNLMVVALAAGMMDLRVMAAVTV HHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIAAERVVPAGGRFARTVGCGVAAGGMAMIARAAGLA HHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHCCC >Mature Secondary Structure TRTTTGAKAGPITGETALDPRAFGVAVAAVFAVAVVATLAQHASMAAMGGVPMPGGWMA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH SAAWLRPCGRGGGRAFATFAGMWGAMTVTMMLPVLAPQLWHYRRRIGPQAAARSAWLVVV HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEEEE AGAGYFSVWMALGALVFPAGAVMTTAAARLPALARAMPFVSGAVVLAAGALQFSGWKARR ECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LACCRHAEAHDVHRPRAAAVTAWRYGMRAAIRCGACCGNLMVVALAAGMMDLRVMAAVTV HHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIAAERVVPAGGRFARTVGCGVAAGGMAMIARAAGLA HHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA