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The map label for this gene is ycfH [C]

Identifier: 116689912

GI number: 116689912

Start: 2095925

End: 2096704

Strand: Reverse

Name: ycfH [C]

Synonym: Bcen2424_1891

Alternate gene names: 116689912

Gene position: 2096704-2095925 (Counterclockwise)

Preceding gene: 116689913

Following gene: 116689911

Centisome position: 60.18

GC content: 65.64

Gene sequence:

>780_bases
ATGTTCGTCGACTCTCACTGCCACATCAATTTCAAGGGCCTGGCCGACCGCCTGCCGGCCGTTCTCGAGAACATGCGCGA
GCACGACGTCACGCATGCGCTGTGCGTGTCTGTCGATCTCGAGACGCTGCCCGAGGTGCTTGCGATCGCCGAAGCGCACG
ACAACGTGTACGCATCGGTCGGCGTGCATCCCGATCACGAGGACATGCGCGAGCCGACGCTCGCGGAGCTGGTCGAGCTG
GCCGCGCACCCGAAGGTCGTCGCGATCGGCGAAACCGGCCTCGACTACTATCGCCTCGAAGGGCGCTCGATCGCCGACAT
GGAATGGCAGCGCGAACGTTTTCGCACGCACATTCGCGCGGCGACCGCGACGATGAAGCCGCTGATCATCCACACGCGTT
CGTCGTCGGAAGACACGCTGCGGATCATGGCCGAGGAGCGCGCGGACGTGCCGGGCGGCGTGATGCACTGCTTCACCGAG
CCGTGGCCGGTCGCCGAGCAGGCGCTCGCGCAGAACTTCCATATCTCGCTGTCGGGCATCGTCACGTTCAAGAACGCGAC
CGACGTGCAGGACGTCGCGCGGCGCGTGCCGCTCGACCGGCTGCTGATCGAGACCGACTCGCCGTACCTCGCGCCGGTGC
CGTATCGCGGCAAGCCGAATGAACCTGCGTACGTCAGCCATGTCGGACGCTTTATCGCATCCGAGCGCGGTGTCGCCGTC
GAGGCGCTCGCCGATGCGACGACGCAGAACTTTTTCCGGCTGTTCAAGATCGCCCGCTAA

Upstream 100 bases:

>100_bases
CACGCGGGGGCGCGACCGTGGCCGGCCGGCCCGCCCACCTTGCCCGGTGCCGCATGCCGGCGGGCGCATGAGCGCCCGTC
TCACGTATTCAGGAAACACG

Downstream 100 bases:

>100_bases
CGACGGGCGCGCAGCCGACAACCCAGGGAAGGAGCCCACAACAATGACGAAGCCGACCAACCATCTGCCCAAACGCGCAC
TCGTTGCCGCCGCATTCGTC

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDLETLPEVLAIAEAHDNVYASVGVHPDHEDMREPTLAELVEL
AAHPKVVAIGETGLDYYRLEGRSIADMEWQRERFRTHIRAATATMKPLIIHTRSSSEDTLRIMAEERADVPGGVMHCFTE
PWPVAEQALAQNFHISLSGIVTFKNATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGVAV
EALADATTQNFFRLFKIAR

Sequences:

>Translated_259_residues
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDLETLPEVLAIAEAHDNVYASVGVHPDHEDMREPTLAELVEL
AAHPKVVAIGETGLDYYRLEGRSIADMEWQRERFRTHIRAATATMKPLIIHTRSSSEDTLRIMAEERADVPGGVMHCFTE
PWPVAEQALAQNFHISLSGIVTFKNATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGVAV
EALADATTQNFFRLFKIAR
>Mature_259_residues
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDLETLPEVLAIAEAHDNVYASVGVHPDHEDMREPTLAELVEL
AAHPKVVAIGETGLDYYRLEGRSIADMEWQRERFRTHIRAATATMKPLIIHTRSSSEDTLRIMAEERADVPGGVMHCFTE
PWPVAEQALAQNFHISLSGIVTFKNATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGVAV
EALADATTQNFFRLFKIAR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=276, Percent_Identity=27.8985507246377, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=27.9850746268657, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=27.9850746268657, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI226061853, Length=269, Percent_Identity=27.5092936802974, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI14042943, Length=203, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI225903439, Length=180, Percent_Identity=29.4444444444444, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI226061614, Length=263, Percent_Identity=26.615969581749, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=26.1061946902655, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=46.360153256705, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI48994985, Length=235, Percent_Identity=31.9148936170213, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87082439, Length=263, Percent_Identity=28.5171102661597, Blast_Score=114, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI17559024, Length=230, Percent_Identity=30.8695652173913, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17565396, Length=305, Percent_Identity=28.5245901639344, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17543026, Length=300, Percent_Identity=27.3333333333333, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71980746, Length=262, Percent_Identity=23.2824427480916, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24648690, Length=289, Percent_Identity=26.2975778546713, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24586117, Length=211, Percent_Identity=30.3317535545024, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI221330018, Length=211, Percent_Identity=30.3317535545024, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28984; Mature: 28984

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDLETLPEVLAIAEAHDNVYASV
CEECCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHEEECCHHHHHHHHHHHHHCCCEEEEE
GVHPDHEDMREPTLAELVELAAHPKVVAIGETGLDYYRLEGRSIADMEWQRERFRTHIRA
CCCCCHHHHCCCHHHHHHHHHCCCCEEEECCCCCCEEEECCCEECCHHHHHHHHHHHHHH
ATATMKPLIIHTRSSSEDTLRIMAEERADVPGGVMHCFTEPWPVAEQALAQNFHISLSGI
HHHHCCEEEEEECCCCCHHHHHEEHHCCCCCCHHHHHCCCCCCHHHHHHHHCCEEEEEEE
VTFKNATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGVAV
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCH
EALADATTQNFFRLFKIAR
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDLETLPEVLAIAEAHDNVYASV
CEECCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHEEECCHHHHHHHHHHHHHCCCEEEEE
GVHPDHEDMREPTLAELVELAAHPKVVAIGETGLDYYRLEGRSIADMEWQRERFRTHIRA
CCCCCHHHHCCCHHHHHHHHHCCCCEEEECCCCCCEEEECCCEECCHHHHHHHHHHHHHH
ATATMKPLIIHTRSSSEDTLRIMAEERADVPGGVMHCFTEPWPVAEQALAQNFHISLSGI
HHHHCCEEEEEECCCCCHHHHHEEHHCCCCCCHHHHHCCCCCCHHHHHHHHCCEEEEEEE
VTFKNATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGVAV
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCH
EALADATTQNFFRLFKIAR
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]