Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

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The map label for this gene is yahD [C]

Identifier: 116689911

GI number: 116689911

Start: 2095171

End: 2095881

Strand: Reverse

Name: yahD [C]

Synonym: Bcen2424_1890

Alternate gene names: 116689911

Gene position: 2095881-2095171 (Counterclockwise)

Preceding gene: 116689912

Following gene: 116689910

Centisome position: 60.16

GC content: 65.82

Gene sequence:

>711_bases
ATGACGAAGCCGACCAACCATCTGCCCAAACGCGCACTCGTTGCCGCCGCATTCGTCGCGAGCGGCCTGTTCGCCGCCGC
CGGCGCGCATGCCGAGTCGCTCGACGCGATCGTCAAGGCCGTCAAGTTCGACGACATCGCCGATATCGGCAAGCAGCTCA
AGAGCGGCAAGCTCGATCCGAACACGCTCGCGCCGAACGGCGACCCGATCCTCGTGATCGCCGCCCGCGAGAAATCCGAC
AAGGTCGCGGCCGCGATCGCCACGACGCCGAACGTCGATCTCGAGAAGGAAGACAAGGCCGGCGAAAACGCGCTGATGCT
CGCGTCGCTGAACGGCGACCTCGGGCTCGTCAAGCTGCTGATCGACAAGGGCGCGGAAGTCAGCAAGAAGGGCTGGGCGC
CGCTGCATTACGCGGCGACCAACGGCCAGGACGCGGTCGTCAAGGTGCTGCTCGACCACGACGCGTATATCGACACCGCG
TCGCCGAACGGCACGACGCCGCTGATGATGGCCGCGCGCGGCAACCATGCGTCGACGGTCACGCTGCTGCTCGACCAGGG
CGCCGATCCGCAGGTGAAGAACCAGCTCGGCATCACCGCGCTCGAGTTCGCGAAGCACTACAACGCGCCGGACGCGATCG
AGATCCTGAGCAAGCGGACGACGCGTATCGGTGCGGCGACGCCGGCAGATGCGCAAAAGAGTGCAAAATAA

Upstream 100 bases:

>100_bases
GCGCTCGCCGATGCGACGACGCAGAACTTTTTCCGGCTGTTCAAGATCGCCCGCTAACGACGGGCGCGCAGCCGACAACC
CAGGGAAGGAGCCCACAACA

Downstream 100 bases:

>100_bases
CGTTTTTTGGTGCGGCGGCGCCTGTCCGCCGGGCCGGCTTCCGGCCGGCGCCGGGCATCCGGCGCCGCACCAGCCAGGGC
AGCAGGCGGTCTCGGGCCGC

Product: ankyrin repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTKPTNHLPKRALVAAAFVASGLFAAAGAHAESLDAIVKAVKFDDIADIGKQLKSGKLDPNTLAPNGDPILVIAAREKSD
KVAAAIATTPNVDLEKEDKAGENALMLASLNGDLGLVKLLIDKGAEVSKKGWAPLHYAATNGQDAVVKVLLDHDAYIDTA
SPNGTTPLMMAARGNHASTVTLLLDQGADPQVKNQLGITALEFAKHYNAPDAIEILSKRTTRIGAATPADAQKSAK

Sequences:

>Translated_236_residues
MTKPTNHLPKRALVAAAFVASGLFAAAGAHAESLDAIVKAVKFDDIADIGKQLKSGKLDPNTLAPNGDPILVIAAREKSD
KVAAAIATTPNVDLEKEDKAGENALMLASLNGDLGLVKLLIDKGAEVSKKGWAPLHYAATNGQDAVVKVLLDHDAYIDTA
SPNGTTPLMMAARGNHASTVTLLLDQGADPQVKNQLGITALEFAKHYNAPDAIEILSKRTTRIGAATPADAQKSAK
>Mature_235_residues
TKPTNHLPKRALVAAAFVASGLFAAAGAHAESLDAIVKAVKFDDIADIGKQLKSGKLDPNTLAPNGDPILVIAAREKSDK
VAAAIATTPNVDLEKEDKAGENALMLASLNGDLGLVKLLIDKGAEVSKKGWAPLHYAATNGQDAVVKVLLDHDAYIDTAS
PNGTTPLMMAARGNHASTVTLLLDQGADPQVKNQLGITALEFAKHYNAPDAIEILSKRTTRIGAATPADAQKSAK

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 18 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI30425444, Length=160, Percent_Identity=31.25, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI52426737, Length=141, Percent_Identity=39.0070921985816, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI188595682, Length=141, Percent_Identity=39.0070921985816, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI38569428, Length=145, Percent_Identity=34.4827586206897, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI38569426, Length=145, Percent_Identity=34.4827586206897, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI52426735, Length=141, Percent_Identity=39.0070921985816, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI148596917, Length=128, Percent_Identity=35.9375, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI70780355, Length=152, Percent_Identity=34.2105263157895, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI215598574, Length=152, Percent_Identity=34.2105263157895, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI70780359, Length=152, Percent_Identity=34.2105263157895, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI70780353, Length=152, Percent_Identity=34.2105263157895, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI32967601, Length=141, Percent_Identity=37.5886524822695, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780357, Length=152, Percent_Identity=34.2105263157895, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI121582655, Length=193, Percent_Identity=29.0155440414508, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI268607595, Length=174, Percent_Identity=31.6091954022989, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI24233530, Length=110, Percent_Identity=43.6363636363636, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI30089994, Length=167, Percent_Identity=31.7365269461078, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI62988328, Length=174, Percent_Identity=31.6091954022989, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI157266328, Length=123, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI157739945, Length=107, Percent_Identity=40.1869158878505, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI38176283, Length=167, Percent_Identity=31.7365269461078, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI156142184, Length=127, Percent_Identity=35.4330708661417, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI28605137, Length=112, Percent_Identity=36.6071428571429, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI4506217, Length=112, Percent_Identity=36.6071428571429, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI68131557, Length=112, Percent_Identity=41.9642857142857, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI224809478, Length=137, Percent_Identity=32.1167883211679, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI224809476, Length=137, Percent_Identity=32.1167883211679, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI224809474, Length=137, Percent_Identity=32.1167883211679, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI224809472, Length=137, Percent_Identity=32.1167883211679, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI224809470, Length=137, Percent_Identity=32.1167883211679, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI224809468, Length=137, Percent_Identity=32.1167883211679, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI225543463, Length=168, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI304361760, Length=112, Percent_Identity=41.9642857142857, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI304361757, Length=112, Percent_Identity=41.9642857142857, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI223634006, Length=102, Percent_Identity=40.1960784313725, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI256574792, Length=114, Percent_Identity=36.8421052631579, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI59850762, Length=192, Percent_Identity=27.0833333333333, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI56550047, Length=192, Percent_Identity=27.0833333333333, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI225543461, Length=168, Percent_Identity=32.1428571428571, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI41055989, Length=130, Percent_Identity=33.8461538461538, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI87239981, Length=137, Percent_Identity=34.3065693430657, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI30348954, Length=192, Percent_Identity=29.6875, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI12746412, Length=155, Percent_Identity=29.6774193548387, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI19924156, Length=136, Percent_Identity=33.8235294117647, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI126723390, Length=190, Percent_Identity=31.0526315789474, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI21956645, Length=104, Percent_Identity=41.3461538461538, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7657265, Length=145, Percent_Identity=34.4827586206897, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI56676397, Length=142, Percent_Identity=36.6197183098592, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI18079216, Length=134, Percent_Identity=29.8507462686567, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI156142199, Length=141, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI156142197, Length=141, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI4506499, Length=135, Percent_Identity=32.5925925925926, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI116063534, Length=127, Percent_Identity=35.4330708661417, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI38683807, Length=139, Percent_Identity=34.5323741007194, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI38683816, Length=139, Percent_Identity=34.5323741007194, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI46519154, Length=186, Percent_Identity=31.7204301075269, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI46519151, Length=186, Percent_Identity=31.1827956989247, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI212646035, Length=164, Percent_Identity=32.3170731707317, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI212646031, Length=164, Percent_Identity=32.3170731707317, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI212646033, Length=164, Percent_Identity=32.3170731707317, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71981411, Length=176, Percent_Identity=34.0909090909091, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI212645194, Length=163, Percent_Identity=35.5828220858896, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71981389, Length=158, Percent_Identity=34.8101265822785, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71981414, Length=158, Percent_Identity=34.8101265822785, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25145251, Length=158, Percent_Identity=34.8101265822785, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17542700, Length=158, Percent_Identity=34.8101265822785, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161082089, Length=142, Percent_Identity=39.4366197183099, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI161082099, Length=142, Percent_Identity=39.4366197183099, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI161082085, Length=142, Percent_Identity=39.4366197183099, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI161082092, Length=142, Percent_Identity=39.4366197183099, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI161082081, Length=142, Percent_Identity=39.4366197183099, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI161082096, Length=142, Percent_Identity=39.4366197183099, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI161082106, Length=142, Percent_Identity=39.4366197183099, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI161082110, Length=142, Percent_Identity=39.4366197183099, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281359521, Length=154, Percent_Identity=33.7662337662338, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI281359519, Length=154, Percent_Identity=33.7662337662338, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI28558752, Length=154, Percent_Identity=33.7662337662338, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI28558750, Length=154, Percent_Identity=33.7662337662338, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI28558756, Length=154, Percent_Identity=33.7662337662338, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI28558754, Length=154, Percent_Identity=33.7662337662338, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI28571867, Length=188, Percent_Identity=29.7872340425532, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI28571865, Length=188, Percent_Identity=29.7872340425532, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI221330480, Length=187, Percent_Identity=31.0160427807487, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221330476, Length=187, Percent_Identity=31.0160427807487, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221472807, Length=108, Percent_Identity=37.037037037037, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45550479, Length=187, Percent_Identity=31.0160427807487, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221330482, Length=187, Percent_Identity=31.0160427807487, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221330474, Length=187, Percent_Identity=31.0160427807487, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45552223, Length=108, Percent_Identity=37.037037037037, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581260, Length=232, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581258, Length=232, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45551135, Length=187, Percent_Identity=31.0160427807487, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221330478, Length=187, Percent_Identity=31.0160427807487, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17998549, Length=108, Percent_Identity=37.037037037037, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573593, Length=187, Percent_Identity=31.0160427807487, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281363919, Length=187, Percent_Identity=31.0160427807487, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24650843, Length=165, Percent_Identity=29.6969696969697, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI281362364, Length=126, Percent_Identity=34.9206349206349, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45550629, Length=134, Percent_Identity=34.3283582089552, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683
- InterPro:   IPR007685 [H]

Pfam domain/function: PF00023 Ank; PF04607 RelA_SpoT [H]

EC number: NA

Molecular weight: Translated: 24556; Mature: 24425

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTKPTNHLPKRALVAAAFVASGLFAAAGAHAESLDAIVKAVKFDDIADIGKQLKSGKLDP
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NTLAPNGDPILVIAAREKSDKVAAAIATTPNVDLEKEDKAGENALMLASLNGDLGLVKLL
CCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
IDKGAEVSKKGWAPLHYAATNGQDAVVKVLLDHDAYIDTASPNGTTPLMMAARGNHASTV
HHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEECCCCCCCCCEEEEECCCCCEEE
TLLLDQGADPQVKNQLGITALEFAKHYNAPDAIEILSKRTTRIGAATPADAQKSAK
EEEEECCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKPTNHLPKRALVAAAFVASGLFAAAGAHAESLDAIVKAVKFDDIADIGKQLKSGKLDP
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NTLAPNGDPILVIAAREKSDKVAAAIATTPNVDLEKEDKAGENALMLASLNGDLGLVKLL
CCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
IDKGAEVSKKGWAPLHYAATNGQDAVVKVLLDHDAYIDTASPNGTTPLMMAARGNHASTV
HHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEECCCCCCCCCEEEEECCCCCEEE
TLLLDQGADPQVKNQLGITALEFAKHYNAPDAIEILSKRTTRIGAATPADAQKSAK
EEEEECCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA