| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689393
Identifier: 116689393
GI number: 116689393
Start: 1509240
End: 1510043
Strand: Direct
Name: 116689393
Synonym: Bcen2424_1371
Alternate gene names: NA
Gene position: 1509240-1510043 (Clockwise)
Preceding gene: 116689392
Following gene: 116689396
Centisome position: 43.32
GC content: 68.41
Gene sequence:
>804_bases ATGGCCCTCCAGAACCGGAACCGCCGTCTTAAGCCGCTCGCCGCCCTTGGCGCACTCACGGCGCTCGCCGCGCTGTCGCC CGTTCATGCCGCCGAGCCGGCCCAGCCCGACCGTCAACTGAAAACCTTCATCCACGGCACATACGGCGACTGGCGTGCGG ACCGCAAGGGCTGGCAGGCGGACGAGGGCGATTTCATCCATTCGCCGTGCGGCGTGCTGCGCGTGGCGACCGCGGATGGC CCGCGCACGCTGCTCGCGATGTGCGGCGAGACGGAGGCAGCGGTGCAGAACGGGATGCCGGGTATGGATTCGGACGCGAC ACCGGGCGCGATCGACCTGTACGTGCTGCAGCCTTCGCCGGACGGCAGGACGCTCGAACCGATCGCGAAGAAAACGGAGA TCGCATCGGGCGAGCGAGGCGAACCGGGCACGGTGCGCATCGAGCGGCTCGGGCCGCACCTGTTCGGGTTCGTGATCGGC GAAAGCGACACGCGGCAGGGCTACACGCAACGCTTTCGTTCGATCTGGCTGCCATACGGCAATTCTCTGGTGCATGCGGC GGCGCGCATCGACGAGGCGCTCGACAATGCCGAGTCGACGGAATGCGCGCATGTTCGCGCGCGCTGCGAGGAACGTCGCT TCGAGATCGCGCCGGACACGACCGGCACGGGCGACGTCTATCCGCTGATGGTCACGGAAACCGGTACGCGCGGCGACAAG GCGATCCACGCACGCTACACGGTGAAGTTCGACGCCGCGCGCGGCCGCTACGTCGTGCCGAAGGCGCTGCGCGACGGGTA CTGA
Upstream 100 bases:
>100_bases CGCGCGGCTGAAGCCGGACGGCACCGGCATCGCGCCCCGGCAACCTTGATCCGTTGAGTCTGCAACAATTCGCCACATAT CAATCCGAACTGATCTCGTC
Downstream 100 bases:
>100_bases TCCGTGGCGCGGGAACGGGCGGCATTGCGCCGCCTGCGCATCACACGTACAGGTAGCGCACCAGGTGGAAGAACACCGGT GCGGCGAAGCAGATCGAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MALQNRNRRLKPLAALGALTALAALSPVHAAEPAQPDRQLKTFIHGTYGDWRADRKGWQADEGDFIHSPCGVLRVATADG PRTLLAMCGETEAAVQNGMPGMDSDATPGAIDLYVLQPSPDGRTLEPIAKKTEIASGERGEPGTVRIERLGPHLFGFVIG ESDTRQGYTQRFRSIWLPYGNSLVHAAARIDEALDNAESTECAHVRARCEERRFEIAPDTTGTGDVYPLMVTETGTRGDK AIHARYTVKFDAARGRYVVPKALRDGY
Sequences:
>Translated_267_residues MALQNRNRRLKPLAALGALTALAALSPVHAAEPAQPDRQLKTFIHGTYGDWRADRKGWQADEGDFIHSPCGVLRVATADG PRTLLAMCGETEAAVQNGMPGMDSDATPGAIDLYVLQPSPDGRTLEPIAKKTEIASGERGEPGTVRIERLGPHLFGFVIG ESDTRQGYTQRFRSIWLPYGNSLVHAAARIDEALDNAESTECAHVRARCEERRFEIAPDTTGTGDVYPLMVTETGTRGDK AIHARYTVKFDAARGRYVVPKALRDGY >Mature_266_residues ALQNRNRRLKPLAALGALTALAALSPVHAAEPAQPDRQLKTFIHGTYGDWRADRKGWQADEGDFIHSPCGVLRVATADGP RTLLAMCGETEAAVQNGMPGMDSDATPGAIDLYVLQPSPDGRTLEPIAKKTEIASGERGEPGTVRIERLGPHLFGFVIGE SDTRQGYTQRFRSIWLPYGNSLVHAAARIDEALDNAESTECAHVRARCEERRFEIAPDTTGTGDVYPLMVTETGTRGDKA IHARYTVKFDAARGRYVVPKALRDGY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29099; Mature: 28968
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALQNRNRRLKPLAALGALTALAALSPVHAAEPAQPDRQLKTFIHGTYGDWRADRKGWQA CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC DEGDFIHSPCGVLRVATADGPRTLLAMCGETEAAVQNGMPGMDSDATPGAIDLYVLQPSP CCCCEEECCCCEEEEEECCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCC DGRTLEPIAKKTEIASGERGEPGTVRIERLGPHLFGFVIGESDTRQGYTQRFRSIWLPYG CCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHEECCCC NSLVHAAARIDEALDNAESTECAHVRARCEERRFEIAPDTTGTGDVYPLMVTETGTRGDK CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEECCCCCCCC AIHARYTVKFDAARGRYVVPKALRDGY EEEEEEEEEEECCCCCEECCHHHCCCC >Mature Secondary Structure ALQNRNRRLKPLAALGALTALAALSPVHAAEPAQPDRQLKTFIHGTYGDWRADRKGWQA CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC DEGDFIHSPCGVLRVATADGPRTLLAMCGETEAAVQNGMPGMDSDATPGAIDLYVLQPSP CCCCEEECCCCEEEEEECCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCC DGRTLEPIAKKTEIASGERGEPGTVRIERLGPHLFGFVIGESDTRQGYTQRFRSIWLPYG CCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHEECCCC NSLVHAAARIDEALDNAESTECAHVRARCEERRFEIAPDTTGTGDVYPLMVTETGTRGDK CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEECCCCCCCC AIHARYTVKFDAARGRYVVPKALRDGY EEEEEEEEEEECCCCCEECCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA