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The map label for this gene is yddU [C]

Identifier: 116689211

GI number: 116689211

Start: 1306213

End: 1308048

Strand: Reverse

Name: yddU [C]

Synonym: Bcen2424_1189

Alternate gene names: 116689211

Gene position: 1308048-1306213 (Counterclockwise)

Preceding gene: 116689213

Following gene: 116689210

Centisome position: 37.55

GC content: 69.28

Gene sequence:

>1836_bases
ATGGAAGCCAACAGGAAACAGACGTCACGCAAGGGCTCCTGGCGCAGCGCCTTGCATACGCTGCGACGCTTCGCTCGGTC
GGGCGGCGCGCTGATGCCCGCGCGCGCCGTCGCGCCGCGCCGCGACGACTCCGTGCGCAACTGGCTGGAACAGACGGTCG
GCACGGTGGATTTCCTCGCCCACGTCGACCGCGAGCTGCGCTTTCTGTACGTGTCCGACGCCAGCCTGCGCTTCATCGGC
TACCACCGCGACTATCTGCATACGCTGACGCTGCGCGACCTGATCGCCGAACAGGATACCCCGGCGCTCGAAGGCCTGCT
TGCACGCGCCGCCCGTTCCGGCCAGGTCGAGAAGGCGACGATGTGCATCGTCAAGTCGCTCACCTACCCGCTGGACGTCG
AGATCCGCGCGTTCAAGAGCCGCCACCACGGCGTCGACGGCTTCGCGATCGCGGCGTTCGACGTGTCGTCGTGGCGCGCG
CTCGAGGCTCGCCTGACGTACGAAATGCACCACGACCCGATGACGGGGCTCGACAACCTGTCCGCGCTCGTGCCGGCGCT
GATGGCCGCGCAGCAGACGGCCGACGAGAGCGGCACCTGCGCGGCGCTGCTGCTGCTCGACCTCGACGACTACCAGCGGA
TCAACCGCGCGCTCGGCTACGACGCCGGTGACATGCTGCTGCGCGAGACCGCACAGCGGCTGAAGGCGCTCGTCACGCCG
AACGAGCGGCTCGCGCGCGTCGCGAGCGACAAGTTCGCGGTCGTGCTGGGCGCAGCGGACCGCGCGCAGGCGAGCCATGC
CGCCGATGCGCTCGCGCGCCGGCTGCAGGCCGCGGTGCGCGAGCCCTATGTATTCCAGGGGCAGACCGTGCACCTGTCCG
CGAGCATCGGCATCGCGCTCTATCCCGACGAACGTGCCGCACCGCACCGGGCGCAGCATCACAGCCCGCTGCTGCGCCGC
GCCGACCACGCGCTCGCGCAGGCGAAGGCATCGGGCGGCAACGCGCTCGCGTTCCATGCGCCCGTCGACGATCCGGCCGA
CGCCGAACGGCTCAAGCTCGAGGCGGATCTGTACGACGGCGTGCGCAACGGCGAGTTTTCGCTCCATTTCCAGCCGATCA
CGCGCAGCCAGTCGGGCGCGGTGGTCGGCGTCGAGGCACTGATCCGCTGGCGCCATCCGGTGCACGGCCTCGTGCCGCCG
GCCACCTTCATCCCGCTCGCCGAATCGATCGGCCTGATCAACTACCTCGGCAACTGGGTGCTCAAGGCCGCGTGCATGCA
GCTCGTCGCGTGGGACGGCCAGGGGCTCGCGCTGCAATACGTGGCGGTCAACGTGTCGCCGCAGCAGTTCCGCGACCCGC
GCTTCACGCAGAGCGTGCGCGAGGCGATCGCGCTGACCGGCATCGACCCGCGCCGCATCGTGCTCGAAATCACCGAAAGC
CTGCTGATGCACGATCCCGCGCACGCGAAAATCCTGCTCGAGGAACTGACCGGTCTCGGCATCCGCTTCGCGATCGACGA
TTTCGGCACCGGCTATTCGAGCCTCGCCTATCTGCAGCGTTTCCCGCTCGCGAAGCTGAAGATCGACCGCAGTTTCGTCG
AGAACCTGCTGACGTCGCGCAACGACCGCGCGATCGTGTCCGCGGTGGTCGGCCTCGCGCAGACACTGGATCTCGAGCTC
GTTGCCGAAGGCGTCGAGACCGAGGCGCAGCGCGCGCTGCTGTCGGAGATGGGCTGCAATCACATCCAGGGCTGGCTCGT
CTGCCAGGCGCTGCCGTCCGAGGAGCTCGCGCGGCGCTTCGAGGCGCAGCAGCTGCACCTGCACGCCGCCGCCTGA

Upstream 100 bases:

>100_bases
CGCGGCAGCGCCGCCTGCGGCCGGCCCGTTAAAGATTTCTGACAGTCTGCCGTTATTCCTTCCGGACAACCGGTTCCAGC
CCTTCACGTCAGCGAGAAAC

Downstream 100 bases:

>100_bases
CGCGCGCGGCGAACCGAACAGATCCGTATGTCAACCACCGAATACCTGCCCCGCACCGCGCTGCTCGACAAGCTGTGGGC
CCGGATGAACGAACGGGGCG

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MEANRKQTSRKGSWRSALHTLRRFARSGGALMPARAVAPRRDDSVRNWLEQTVGTVDFLAHVDRELRFLYVSDASLRFIG
YHRDYLHTLTLRDLIAEQDTPALEGLLARAARSGQVEKATMCIVKSLTYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRA
LEARLTYEMHHDPMTGLDNLSALVPALMAAQQTADESGTCAALLLLDLDDYQRINRALGYDAGDMLLRETAQRLKALVTP
NERLARVASDKFAVVLGAADRAQASHAADALARRLQAAVREPYVFQGQTVHLSASIGIALYPDERAAPHRAQHHSPLLRR
ADHALAQAKASGGNALAFHAPVDDPADAERLKLEADLYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPP
ATFIPLAESIGLINYLGNWVLKAACMQLVAWDGQGLALQYVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVLEITES
LLMHDPAHAKILLEELTGLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLEL
VAEGVETEAQRALLSEMGCNHIQGWLVCQALPSEELARRFEAQQLHLHAAA

Sequences:

>Translated_611_residues
MEANRKQTSRKGSWRSALHTLRRFARSGGALMPARAVAPRRDDSVRNWLEQTVGTVDFLAHVDRELRFLYVSDASLRFIG
YHRDYLHTLTLRDLIAEQDTPALEGLLARAARSGQVEKATMCIVKSLTYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRA
LEARLTYEMHHDPMTGLDNLSALVPALMAAQQTADESGTCAALLLLDLDDYQRINRALGYDAGDMLLRETAQRLKALVTP
NERLARVASDKFAVVLGAADRAQASHAADALARRLQAAVREPYVFQGQTVHLSASIGIALYPDERAAPHRAQHHSPLLRR
ADHALAQAKASGGNALAFHAPVDDPADAERLKLEADLYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPP
ATFIPLAESIGLINYLGNWVLKAACMQLVAWDGQGLALQYVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVLEITES
LLMHDPAHAKILLEELTGLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLEL
VAEGVETEAQRALLSEMGCNHIQGWLVCQALPSEELARRFEAQQLHLHAAA
>Mature_611_residues
MEANRKQTSRKGSWRSALHTLRRFARSGGALMPARAVAPRRDDSVRNWLEQTVGTVDFLAHVDRELRFLYVSDASLRFIG
YHRDYLHTLTLRDLIAEQDTPALEGLLARAARSGQVEKATMCIVKSLTYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRA
LEARLTYEMHHDPMTGLDNLSALVPALMAAQQTADESGTCAALLLLDLDDYQRINRALGYDAGDMLLRETAQRLKALVTP
NERLARVASDKFAVVLGAADRAQASHAADALARRLQAAVREPYVFQGQTVHLSASIGIALYPDERAAPHRAQHHSPLLRR
ADHALAQAKASGGNALAFHAPVDDPADAERLKLEADLYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPP
ATFIPLAESIGLINYLGNWVLKAACMQLVAWDGQGLALQYVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVLEITES
LLMHDPAHAKILLEELTGLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLEL
VAEGVETEAQRALLSEMGCNHIQGWLVCQALPSEELARRFEAQQLHLHAAA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=428, Percent_Identity=33.411214953271, Blast_Score=254, Evalue=9e-69,
Organism=Escherichia coli, GI1787541, Length=448, Percent_Identity=32.3660714285714, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI226510982, Length=425, Percent_Identity=31.7647058823529, Blast_Score=188, Evalue=1e-48,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=34.6938775510204, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1788502, Length=255, Percent_Identity=34.5098039215686, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=35.5932203389831, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=33.75, Blast_Score=138, Evalue=9e-34,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=31.5384615384615, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1787055, Length=232, Percent_Identity=32.3275862068966, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=31.5573770491803, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=32.9365079365079, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87082096, Length=439, Percent_Identity=25.9681093394077, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1788381, Length=300, Percent_Identity=23, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787410, Length=258, Percent_Identity=24.031007751938, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=27.4853801169591, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 67344; Mature: 67344

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEANRKQTSRKGSWRSALHTLRRFARSGGALMPARAVAPRRDDSVRNWLEQTVGTVDFLA
CCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHH
HVDRELRFLYVSDASLRFIGYHRDYLHTLTLRDLIAEQDTPALEGLLARAARSGQVEKAT
HHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH
MCIVKSLTYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRALEARLTYEMHHDPMTGLDNL
HHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHEEEEECCCCCCCHHHH
SALVPALMAAQQTADESGTCAALLLLDLDDYQRINRALGYDAGDMLLRETAQRLKALVTP
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
NERLARVASDKFAVVLGAADRAQASHAADALARRLQAAVREPYVFQGQTVHLSASIGIAL
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECEEEE
YPDERAAPHRAQHHSPLLRRADHALAQAKASGGNALAFHAPVDDPADAERLKLEADLYDG
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHEEEEHHHHCC
VRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYLGNWV
CCCCEEEEEEEECCCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LKAACMQLVAWDGQGLALQYVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVLEITES
HHHHHHHHHHCCCCCEEEEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LLMHDPAHAKILLEELTGLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSR
HHHCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCHHHEECHHHHHHHHHCC
NDRAIVSAVVGLAQTLDLELVAEGVETEAQRALLSEMGCNHIQGWLVCQALPSEELARRF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHEEECCCHHHHHHHH
EAQQLHLHAAA
HHHHHEEEECC
>Mature Secondary Structure
MEANRKQTSRKGSWRSALHTLRRFARSGGALMPARAVAPRRDDSVRNWLEQTVGTVDFLA
CCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHH
HVDRELRFLYVSDASLRFIGYHRDYLHTLTLRDLIAEQDTPALEGLLARAARSGQVEKAT
HHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH
MCIVKSLTYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRALEARLTYEMHHDPMTGLDNL
HHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHEEEEECCCCCCCHHHH
SALVPALMAAQQTADESGTCAALLLLDLDDYQRINRALGYDAGDMLLRETAQRLKALVTP
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
NERLARVASDKFAVVLGAADRAQASHAADALARRLQAAVREPYVFQGQTVHLSASIGIAL
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECEEEE
YPDERAAPHRAQHHSPLLRRADHALAQAKASGGNALAFHAPVDDPADAERLKLEADLYDG
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHEEEEHHHHCC
VRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYLGNWV
CCCCEEEEEEEECCCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LKAACMQLVAWDGQGLALQYVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVLEITES
HHHHHHHHHHCCCCCEEEEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LLMHDPAHAKILLEELTGLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSR
HHHCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCHHHEECHHHHHHHHHCC
NDRAIVSAVVGLAQTLDLELVAEGVETEAQRALLSEMGCNHIQGWLVCQALPSEELARRF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHEEECCCHHHHHHHH
EAQQLHLHAAA
HHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]