| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116689210
Identifier: 116689210
GI number: 116689210
Start: 1304662
End: 1306185
Strand: Reverse
Name: 116689210
Synonym: Bcen2424_1188
Alternate gene names: NA
Gene position: 1306185-1304662 (Counterclockwise)
Preceding gene: 116689211
Following gene: 116689201
Centisome position: 37.49
GC content: 70.34
Gene sequence:
>1524_bases ATGTCAACCACCGAATACCTGCCCCGCACCGCGCTGCTCGACAAGCTGTGGGCCCGGATGAACGAACGGGGCGATTTCCC GCTGCTGTCGGAATCGCTGCGCGCGACGATGGCCGCGATGAAGAACGACGACCTCGACTTCACCGCGCTCGTGCGCGTCG TGCTGTCGGACTTCGCGCTCACGCAGAAAGTGCTGCGGCTCGCGAACTCCGCGATGTACATGGCGTTCGGCGGCAACATC ACCACCGTGACCCGCGCACTGATGGTGCTCGGCATGGACGCCGTCGGCCATCTCGTCGTCGGGTTGAAGCTCGTCGACCA TTTCCATCAGAGCACGCCGCGGCGCATCGACGCGAAGCTGGCGCTGAACCGCGCGCTGCTGTCCGGCTGCGTCGCGCGCA AGCTCACCGAGCGCGCCGAACTGCGCTCGGGCGAGGAAGCCGTCGTCTGCACGCTGATGCGCCAGGTCGGCAAGCTGCTG GTGGTCTGCTATCTCGACAACGAATGGGATCACATCCGCCGCCGCGCGGCCGAGTTGAACGGCGACGAATCGGCCGCCTG CGTCGACGTGCTCGGCGTCGGCTTCGACGAGATCGGTCTCGAAGCCGCCGCGCGCTGGCGGCTGCCCGACGTGATCCGCG CGGGGATGGCCAACGGAGATCACGCGGCGCACGCCGACGCGTTCGACGACGACGGCGACGCCCGCCACGCGGGCCCGGCG GCAGACGACGGCCCGGCCGATCGCGGCCCGGCCGACCGCATCCGCTGGCTGCGCGCGGTGAGCCGCTGCTCGACCGACGT CGCCGGCGCGCTCGTCATGCCCGCGAGCCCGCAGCGCGACGCGCGCATCGCGGCGCTCGCGCAGCACTACGGCGCGGAGC TCGACATGGAATCCGACGCGCTCGTCGAGATCGCCGAACGGCTCGCGCGCGAGGAAGCGAGCGACACCGTGATGCGCGAG ATCGTCGAGCTGCGCGCGAACGCCGATGCGATCGCACGCGCGCAGGCCGCGCCCGAGGCCTGCCTCGAAGCCGGTCTGGC CGACCTGCGCGCGCTGCCGTCCGAGCACGTGCTGACGCCGGTGCTCGCGCTCGCGTCGGAAAGCCTGCTGGCCGGCCTCG CGTTCACGCGCACCGTGATGTTCGTGCGTCACGACGACGGTACGTTCGCCGCGCGCCTGGGCTTCGGCCCCGGCGTCGAC ACGGCGCTCGACCGGCTGCGCTTCGACGAACGCTTCGAGCCGGACGTGTTTCATCTCGCGATCTCGAACTCGGTCGGCAT CTTCATCGAGCAGGCGCAGGAGCCGAAGATGATGAAGCGCCTGCCCGCGTGGTATCTCGATGCGTTCGACGACACGCGCG CATTCGTGCTGCTGCCCGTGCGCGTCGGCACGACGAGCGTCGCGCTGCTGTACGGCGACTGGGCCGGCGCGCAACCCGCA CGCAAGATCTCGCAGCAGGAGATGGCCGTGCTCAACGAACTCGCGCGCGAGCTGGGGCGGTTCTTTCCCGCGCAGCCAGG CTGA
Upstream 100 bases:
>100_bases CCAGGCGCTGCCGTCCGAGGAGCTCGCGCGGCGCTTCGAGGCGCAGCAGCTGCACCTGCACGCCGCCGCCTGACGCGCGC GGCGAACCGAACAGATCCGT
Downstream 100 bases:
>100_bases CGGCCGGCGCGCGTCCGGCGTTTTCGCTCCCCAAAAGAAAAACCCGGCCGCATCAGCGGCCGGGTTTTCTTTACAACAGC GTGCGCTCGAGCGATGCGCT
Product: putative signal transduction protein
Products: NA
Alternate protein names: Serine/Threonine Protein Kinase; Protein KinaseGAF; Metal Dependent Phosphohydrolase; GAF-Domain-Containing Protein; HDIG Domain Protein; HDOD Domain Family
Number of amino acids: Translated: 507; Mature: 506
Protein sequence:
>507_residues MSTTEYLPRTALLDKLWARMNERGDFPLLSESLRATMAAMKNDDLDFTALVRVVLSDFALTQKVLRLANSAMYMAFGGNI TTVTRALMVLGMDAVGHLVVGLKLVDHFHQSTPRRIDAKLALNRALLSGCVARKLTERAELRSGEEAVVCTLMRQVGKLL VVCYLDNEWDHIRRRAAELNGDESAACVDVLGVGFDEIGLEAAARWRLPDVIRAGMANGDHAAHADAFDDDGDARHAGPA ADDGPADRGPADRIRWLRAVSRCSTDVAGALVMPASPQRDARIAALAQHYGAELDMESDALVEIAERLAREEASDTVMRE IVELRANADAIARAQAAPEACLEAGLADLRALPSEHVLTPVLALASESLLAGLAFTRTVMFVRHDDGTFAARLGFGPGVD TALDRLRFDERFEPDVFHLAISNSVGIFIEQAQEPKMMKRLPAWYLDAFDDTRAFVLLPVRVGTTSVALLYGDWAGAQPA RKISQQEMAVLNELARELGRFFPAQPG
Sequences:
>Translated_507_residues MSTTEYLPRTALLDKLWARMNERGDFPLLSESLRATMAAMKNDDLDFTALVRVVLSDFALTQKVLRLANSAMYMAFGGNI TTVTRALMVLGMDAVGHLVVGLKLVDHFHQSTPRRIDAKLALNRALLSGCVARKLTERAELRSGEEAVVCTLMRQVGKLL VVCYLDNEWDHIRRRAAELNGDESAACVDVLGVGFDEIGLEAAARWRLPDVIRAGMANGDHAAHADAFDDDGDARHAGPA ADDGPADRGPADRIRWLRAVSRCSTDVAGALVMPASPQRDARIAALAQHYGAELDMESDALVEIAERLAREEASDTVMRE IVELRANADAIARAQAAPEACLEAGLADLRALPSEHVLTPVLALASESLLAGLAFTRTVMFVRHDDGTFAARLGFGPGVD TALDRLRFDERFEPDVFHLAISNSVGIFIEQAQEPKMMKRLPAWYLDAFDDTRAFVLLPVRVGTTSVALLYGDWAGAQPA RKISQQEMAVLNELARELGRFFPAQPG >Mature_506_residues STTEYLPRTALLDKLWARMNERGDFPLLSESLRATMAAMKNDDLDFTALVRVVLSDFALTQKVLRLANSAMYMAFGGNIT TVTRALMVLGMDAVGHLVVGLKLVDHFHQSTPRRIDAKLALNRALLSGCVARKLTERAELRSGEEAVVCTLMRQVGKLLV VCYLDNEWDHIRRRAAELNGDESAACVDVLGVGFDEIGLEAAARWRLPDVIRAGMANGDHAAHADAFDDDGDARHAGPAA DDGPADRGPADRIRWLRAVSRCSTDVAGALVMPASPQRDARIAALAQHYGAELDMESDALVEIAERLAREEASDTVMREI VELRANADAIARAQAAPEACLEAGLADLRALPSEHVLTPVLALASESLLAGLAFTRTVMFVRHDDGTFAARLGFGPGVDT ALDRLRFDERFEPDVFHLAISNSVGIFIEQAQEPKMMKRLPAWYLDAFDDTRAFVLLPVRVGTTSVALLYGDWAGAQPAR KISQQEMAVLNELARELGRFFPAQPG
Specific function: Unknown
COG id: COG1639
COG function: function code T; Predicted signal transduction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55296; Mature: 55165
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTEYLPRTALLDKLWARMNERGDFPLLSESLRATMAAMKNDDLDFTALVRVVLSDFAL CCCHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH TQKVLRLANSAMYMAFGGNITTVTRALMVLGMDAVGHLVVGLKLVDHFHQSTPRRIDAKL HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH ALNRALLSGCVARKLTERAELRSGEEAVVCTLMRQVGKLLVVCYLDNEWDHIRRRAAELN HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHCC GDESAACVDVLGVGFDEIGLEAAARWRLPDVIRAGMANGDHAAHADAFDDDGDARHAGPA CCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC ADDGPADRGPADRIRWLRAVSRCSTDVAGALVMPASPQRDARIAALAQHYGAELDMESDA CCCCCCCCCHHHHHHHHHHHHHHCHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHH LVEIAERLAREEASDTVMREIVELRANADAIARAQAAPEACLEAGLADLRALPSEHVLTP HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHH VLALASESLLAGLAFTRTVMFVRHDDGTFAARLGFGPGVDTALDRLRFDERFEPDVFHLA HHHHHHHHHHHHHHHHHEEEEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE ISNSVGIFIEQAQEPKMMKRLPAWYLDAFDDTRAFVLLPVRVGTTSVALLYGDWAGAQPA ECCCCEEEEECCCCCHHHHHCCHHHHHCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHH RKISQQEMAVLNELARELGRFFPAQPG HHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure STTEYLPRTALLDKLWARMNERGDFPLLSESLRATMAAMKNDDLDFTALVRVVLSDFAL CCHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH TQKVLRLANSAMYMAFGGNITTVTRALMVLGMDAVGHLVVGLKLVDHFHQSTPRRIDAKL HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH ALNRALLSGCVARKLTERAELRSGEEAVVCTLMRQVGKLLVVCYLDNEWDHIRRRAAELN HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHCC GDESAACVDVLGVGFDEIGLEAAARWRLPDVIRAGMANGDHAAHADAFDDDGDARHAGPA CCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC ADDGPADRGPADRIRWLRAVSRCSTDVAGALVMPASPQRDARIAALAQHYGAELDMESDA CCCCCCCCCHHHHHHHHHHHHHHCHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHH LVEIAERLAREEASDTVMREIVELRANADAIARAQAAPEACLEAGLADLRALPSEHVLTP HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHH VLALASESLLAGLAFTRTVMFVRHDDGTFAARLGFGPGVDTALDRLRFDERFEPDVFHLA HHHHHHHHHHHHHHHHHEEEEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE ISNSVGIFIEQAQEPKMMKRLPAWYLDAFDDTRAFVLLPVRVGTTSVALLYGDWAGAQPA ECCCCEEEEECCCCCHHHHHCCHHHHHCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHH RKISQQEMAVLNELARELGRFFPAQPG HHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA