| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yhbW [H]
Identifier: 116689191
GI number: 116689191
Start: 1283208
End: 1284206
Strand: Reverse
Name: yhbW [H]
Synonym: Bcen2424_1169
Alternate gene names: 116689191
Gene position: 1284206-1283208 (Counterclockwise)
Preceding gene: 116689201
Following gene: 116689189
Centisome position: 36.86
GC content: 70.47
Gene sequence:
>999_bases ATGACACCGTTTTCCGTACTCGATCTCGCCCCCATTCCGGCCGGCGCCGACGCCTCGCAGGCGTTCCGTAACACCGTCGA TCTCGCACAGCATGCGGAACGCTGGGGCTACCAGCGCTACTGGCTGGCCGAGCATCACAACATGCCGGGGATCGCGAGTG CGGCCACCGCCGTCGTGATCGGCCACGTCGCGGGCGCCACGCGGACGATCCGGGTCGGCTCGGGCGGCATCATGCTGCCG AACCATGCGCCGCTCGTGATCGCCGAACAGTTCGGCACGCTCGCGTCGCTGTATCCGGGGCGCATCGACCTCGGCCTCGG CCGCGCGCCCGGCACCGACCAGACCACGTCGCGCGCGCTGCGCCGCGACCTGATCGGCAGTGCCGATTCGTTTCCGGACG ACGTCGCGGAGCTGCAGCGCTACTTCGCGGAGCCGGTACCGGGCCAGCGCGTGCGGGCGGTGCCCGGCGCGGGGCTCGAC GTCCCGGTGTGGCTGCTCGGTTCGAGCCTGTTCAGCGCGCAGCTCGCGGCGATGCTCGGGCTGCCGTTCGCGTTCGCGTC GCATTTCGCGCCGGATTATCTGATGCGGGCGCTCGAGATCTATCGCGCGCAATACCGGCCGTCGGCCGCGTGGCCGAAAC CGCATGCGATGGTGGGCGTCAACGTGTTCGCGGCCGAGACCGACGACGAGGCGCGGCGCCTGTTCACGTCGCTGCAGCAA CAGTTCATCAACCTGCGGCGCGGCACGCCGGGCAAGCTGCCGCCGCCCGTCGACGTGCTCGAGGCGAACGAACTCGAGCT CGCGACCGTCGCCCATTCGCTGTCGTTCGCGGCGGTCGGCTCGCGCGATACGGTGCGCGACAAGCTGCGCGAGCGCATCG CGCAGACGGGCGCCGACGAGCTGATCATCACCGCGCAGATCTACGATCACGCCGCGCGGCTGCGCTCGTTCGAACTGACC GCGCAGATCCGCGACGAGCTCGCGAGCGAGGCACGCTGA
Upstream 100 bases:
>100_bases TATCCGCGCGCCGCCAGCACGTTCCGGAACCCTTTGGCAAAATCCTTGGCATTTGTTGCGTCAGCGCATCACCACGCCAC CCCGTTTCGAAGGTCTTCCG
Downstream 100 bases:
>100_bases CCGCACGATTACGCGCGGCCTGCCGCCTGCCCCGCGTCACTGCGGGTGCACGGCCTCCAGCCCGTCGAGCAGCGCCTTGT GGAACGCGTCCGGGTCCTGG
Product: luciferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MTPFSVLDLAPIPAGADASQAFRNTVDLAQHAERWGYQRYWLAEHHNMPGIASAATAVVIGHVAGATRTIRVGSGGIMLP NHAPLVIAEQFGTLASLYPGRIDLGLGRAPGTDQTTSRALRRDLIGSADSFPDDVAELQRYFAEPVPGQRVRAVPGAGLD VPVWLLGSSLFSAQLAAMLGLPFAFASHFAPDYLMRALEIYRAQYRPSAAWPKPHAMVGVNVFAAETDDEARRLFTSLQQ QFINLRRGTPGKLPPPVDVLEANELELATVAHSLSFAAVGSRDTVRDKLRERIAQTGADELIITAQIYDHAARLRSFELT AQIRDELASEAR
Sequences:
>Translated_332_residues MTPFSVLDLAPIPAGADASQAFRNTVDLAQHAERWGYQRYWLAEHHNMPGIASAATAVVIGHVAGATRTIRVGSGGIMLP NHAPLVIAEQFGTLASLYPGRIDLGLGRAPGTDQTTSRALRRDLIGSADSFPDDVAELQRYFAEPVPGQRVRAVPGAGLD VPVWLLGSSLFSAQLAAMLGLPFAFASHFAPDYLMRALEIYRAQYRPSAAWPKPHAMVGVNVFAAETDDEARRLFTSLQQ QFINLRRGTPGKLPPPVDVLEANELELATVAHSLSFAAVGSRDTVRDKLRERIAQTGADELIITAQIYDHAARLRSFELT AQIRDELASEAR >Mature_331_residues TPFSVLDLAPIPAGADASQAFRNTVDLAQHAERWGYQRYWLAEHHNMPGIASAATAVVIGHVAGATRTIRVGSGGIMLPN HAPLVIAEQFGTLASLYPGRIDLGLGRAPGTDQTTSRALRRDLIGSADSFPDDVAELQRYFAEPVPGQRVRAVPGAGLDV PVWLLGSSLFSAQLAAMLGLPFAFASHFAPDYLMRALEIYRAQYRPSAAWPKPHAMVGVNVFAAETDDEARRLFTSLQQQ FINLRRGTPGKLPPPVDVLEANELELATVAHSLSFAAVGSRDTVRDKLRERIAQTGADELIITAQIYDHAARLRSFELTA QIRDELASEAR
Specific function: Unknown
COG id: COG2141
COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To bacterial alkanal monooxygenase alpha and beta chains [H]
Homologues:
Organism=Escherichia coli, GI1789551, Length=326, Percent_Identity=58.2822085889571, Blast_Score=388, Evalue=1e-109,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011251 - InterPro: IPR016048 - InterPro: IPR019949 [H]
Pfam domain/function: PF00296 Bac_luciferase [H]
EC number: NA
Molecular weight: Translated: 36011; Mature: 35880
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPFSVLDLAPIPAGADASQAFRNTVDLAQHAERWGYQRYWLAEHHNMPGIASAATAVVI CCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCHHHHHHHHHH GHVAGATRTIRVGSGGIMLPNHAPLVIAEQFGTLASLYPGRIDLGLGRAPGTDQTTSRAL HHHCCCCEEEEECCCCEECCCCCCEEEHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHH RRDLIGSADSFPDDVAELQRYFAEPVPGQRVRAVPGAGLDVPVWLLGSSLFSAQLAAMLG HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHC LPFAFASHFAPDYLMRALEIYRAQYRPSAAWPKPHAMVGVNVFAAETDDEARRLFTSLQQ CHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHH QFINLRRGTPGKLPPPVDVLEANELELATVAHSLSFAAVGSRDTVRDKLRERIAQTGADE HHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC LIITAQIYDHAARLRSFELTAQIRDELASEAR EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TPFSVLDLAPIPAGADASQAFRNTVDLAQHAERWGYQRYWLAEHHNMPGIASAATAVVI CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCHHHHHHHHHH GHVAGATRTIRVGSGGIMLPNHAPLVIAEQFGTLASLYPGRIDLGLGRAPGTDQTTSRAL HHHCCCCEEEEECCCCEECCCCCCEEEHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHH RRDLIGSADSFPDDVAELQRYFAEPVPGQRVRAVPGAGLDVPVWLLGSSLFSAQLAAMLG HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHC LPFAFASHFAPDYLMRALEIYRAQYRPSAAWPKPHAMVGVNVFAAETDDEARRLFTSLQQ CHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHH QFINLRRGTPGKLPPPVDVLEANELELATVAHSLSFAAVGSRDTVRDKLRERIAQTGADE HHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC LIITAQIYDHAARLRSFELTAQIRDELASEAR EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]