| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689183
Identifier: 116689183
GI number: 116689183
Start: 1272981
End: 1273814
Strand: Direct
Name: 116689183
Synonym: Bcen2424_1161
Alternate gene names: NA
Gene position: 1272981-1273814 (Clockwise)
Preceding gene: 116689182
Following gene: 116689184
Centisome position: 36.54
GC content: 71.82
Gene sequence:
>834_bases ATGAATATCCAGAGGAGAGCAGTCTTGGCGAGAACGAAAACCACGCGCGCAGCGCCGGCCCCCGGCGCCGGTGTGATCTT CGCGTTGCGCGCGATCGGTCTCGTGCTGCTCGCGCGCTGGCTGTTCTCGATGTCCCAGATGGGCTATCGCTCGTCGCTGT CGGCGATGGTGTCGTCGCCGTGGGCATTCCTCTACCTCATCCTGATCTTCCTGCTGCTGGCGCTGCCGGGCGCCGCCGCC CGGGCCGAGCGGCCGTTCCATCCGCTGCCGCAGTGGCTGCGCCAGGCGCTGCGCGCGTTCGCGCTGATCGGCTTCCTGTT CGCCGTGTGGTCGATCGGCGCGTTCACGTGGGCGGCCGGCTGGCGCCGCGCCCTGCACGCGGTGACGGCGACCAACGGCT GGCTCGTCGCCGCGCCGGCGCTCTATGCGGCGATCGTCTGGATTTGCCGGCCGCGGCCGCTGTGGCGGACCAACGTGGCC GCGCGCCGCTTCGCGGTCGGTCGGTATGCGATTTCGCTCGACGTGCTGACGCGCACCGCGATCGTCTGGATGGAAAGCCG CAAGGTTGGCCAGTACGACGCGCGCGAACTGTCGGTGCGCTGGCCCGGCCGGGTCGCACCCACCGCGCCCGCCGCGGGCG AGCAGGGCGCGCAGCCGGCGGTCGTGCCGCCGCGCCGCGGCAGCCTGTTCAGTCGACCGAAGGTGGAGCTGCTGTGGGAT TCGCCGGCGGCGGTCGGCCACAACCGGCAGATCGTGATGCGCGCGCCGCTCACGACCGAAGGCGACCGCGTCGCGGTGCT CGCGCTCGACGCGGCGCTCAAGCAGATCGTCTGA
Upstream 100 bases:
>100_bases GGCGCCGCGAACGGCCCTCGAAGCGGCCCGGCACGCCATCCGGCCATCTGTCCAGACGGTAATGTCCCTATAATGGCCGT GCCGTGAAATCCGGCCCAGT
Downstream 100 bases:
>100_bases CACGGCTCGCGCACCGGGCGCGGGCGACAAGGCGGCGCGATGATCGTCCGCTGGTTGCTGGCTGCCATTCACCTGAGTGC GTTCGGCGTCGCATTCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MNIQRRAVLARTKTTRAAPAPGAGVIFALRAIGLVLLARWLFSMSQMGYRSSLSAMVSSPWAFLYLILIFLLLALPGAAA RAERPFHPLPQWLRQALRAFALIGFLFAVWSIGAFTWAAGWRRALHAVTATNGWLVAAPALYAAIVWICRPRPLWRTNVA ARRFAVGRYAISLDVLTRTAIVWMESRKVGQYDARELSVRWPGRVAPTAPAAGEQGAQPAVVPPRRGSLFSRPKVELLWD SPAAVGHNRQIVMRAPLTTEGDRVAVLALDAALKQIV
Sequences:
>Translated_277_residues MNIQRRAVLARTKTTRAAPAPGAGVIFALRAIGLVLLARWLFSMSQMGYRSSLSAMVSSPWAFLYLILIFLLLALPGAAA RAERPFHPLPQWLRQALRAFALIGFLFAVWSIGAFTWAAGWRRALHAVTATNGWLVAAPALYAAIVWICRPRPLWRTNVA ARRFAVGRYAISLDVLTRTAIVWMESRKVGQYDARELSVRWPGRVAPTAPAAGEQGAQPAVVPPRRGSLFSRPKVELLWD SPAAVGHNRQIVMRAPLTTEGDRVAVLALDAALKQIV >Mature_277_residues MNIQRRAVLARTKTTRAAPAPGAGVIFALRAIGLVLLARWLFSMSQMGYRSSLSAMVSSPWAFLYLILIFLLLALPGAAA RAERPFHPLPQWLRQALRAFALIGFLFAVWSIGAFTWAAGWRRALHAVTATNGWLVAAPALYAAIVWICRPRPLWRTNVA ARRFAVGRYAISLDVLTRTAIVWMESRKVGQYDARELSVRWPGRVAPTAPAAGEQGAQPAVVPPRRGSLFSRPKVELLWD SPAAVGHNRQIVMRAPLTTEGDRVAVLALDAALKQIV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30434; Mature: 30434
Theoretical pI: Translated: 12.33; Mature: 12.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIQRRAVLARTKTTRAAPAPGAGVIFALRAIGLVLLARWLFSMSQMGYRSSLSAMVSSP CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC WAFLYLILIFLLLALPGAAARAERPFHPLPQWLRQALRAFALIGFLFAVWSIGAFTWAAG HHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WRRALHAVTATNGWLVAAPALYAAIVWICRPRPLWRTNVAARRFAVGRYAISLDVLTRTA HHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEHHHHHHHHH IVWMESRKVGQYDARELSVRWPGRVAPTAPAAGEQGAQPAVVPPRRGSLFSRPKVELLWD HHEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC SPAAVGHNRQIVMRAPLTTEGDRVAVLALDAALKQIV CCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCC >Mature Secondary Structure MNIQRRAVLARTKTTRAAPAPGAGVIFALRAIGLVLLARWLFSMSQMGYRSSLSAMVSSP CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC WAFLYLILIFLLLALPGAAARAERPFHPLPQWLRQALRAFALIGFLFAVWSIGAFTWAAG HHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WRRALHAVTATNGWLVAAPALYAAIVWICRPRPLWRTNVAARRFAVGRYAISLDVLTRTA HHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEHHHHHHHHH IVWMESRKVGQYDARELSVRWPGRVAPTAPAAGEQGAQPAVVPPRRGSLFSRPKVELLWD HHEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC SPAAVGHNRQIVMRAPLTTEGDRVAVLALDAALKQIV CCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA