| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yceF [C]
Identifier: 116689139
GI number: 116689139
Start: 1229305
End: 1229937
Strand: Reverse
Name: yceF [C]
Synonym: Bcen2424_1117
Alternate gene names: 116689139
Gene position: 1229937-1229305 (Counterclockwise)
Preceding gene: 116689162
Following gene: 116689138
Centisome position: 35.3
GC content: 70.62
Gene sequence:
>633_bases ATGCCGGATACCGTTTGCCGCCCGCCGCGGCTGATTCTTGCCTCCAGTTCCCGTTACCGCCGGGCGCTCCTCGAGCGCCT CGGCATACCGTTCGACGTCGTGTCGCCCGATCTCGACGAAACCCCGCTGGCCGGCGAAACGCCGGCCGCGACCGCACTGC GCCTCGCCGGCGCGAAGGCGCGCGCCGTGGCCGCGACGATCGACGCGCCGGACGGCGTGCTCGTGATCGGGTCGGACCAG GTCGCGACCTTCGACGGCCACCAGATCGGCAAGCCCGGCACGCACGAGCGCGCGCTCGCGCAACTCGTGTCGATGCAGGG CCGCGAAGTCGAATTCCACAGCGCGCTCTGCCTGTACGACAGCCGGACGGACAACGCGCAGGTCGAGGACATCGTCACGC ACGTGCGCTTCCGCTCGCTGCCCGAGGCCGAACTCGACGCCTACCTGCGCGCGGAAACGCCGTACGACGTGGCCGGCAGC GCGAAGTCCGAAGGGCTTGGCATCGCCCTGCTCGATGCAATCGACTCGGACGACCCGACCGCGCTCGTCGGCCTGCCGCT GATCGCCCTCACGCGGATGCTGCGCGCCGCCGACTACCCGCTGTTTGCAACCACCCGTGGAGACCGCGCATGA
Upstream 100 bases:
>100_bases AGCGGGAAAGCATACCTGTTTTACCTTTTGCGGTCAATCACTTAAGCTTGCGTCCGCGCAACGCCGCGCCCCACCTGACG ACTCACCGATCCAACCGACC
Downstream 100 bases:
>100_bases CCGCCGGCACGCTTTATCTCGTCCCGAACACGCTCGGCGAAGGCGACGAATCGATGCTCGCCGCCGTGCTGCCCGCCGCC GTGCAGGCGCGCGCCGGCAC
Product: Maf-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MPDTVCRPPRLILASSSRYRRALLERLGIPFDVVSPDLDETPLAGETPAATALRLAGAKARAVAATIDAPDGVLVIGSDQ VATFDGHQIGKPGTHERALAQLVSMQGREVEFHSALCLYDSRTDNAQVEDIVTHVRFRSLPEAELDAYLRAETPYDVAGS AKSEGLGIALLDAIDSDDPTALVGLPLIALTRMLRAADYPLFATTRGDRA
Sequences:
>Translated_210_residues MPDTVCRPPRLILASSSRYRRALLERLGIPFDVVSPDLDETPLAGETPAATALRLAGAKARAVAATIDAPDGVLVIGSDQ VATFDGHQIGKPGTHERALAQLVSMQGREVEFHSALCLYDSRTDNAQVEDIVTHVRFRSLPEAELDAYLRAETPYDVAGS AKSEGLGIALLDAIDSDDPTALVGLPLIALTRMLRAADYPLFATTRGDRA >Mature_209_residues PDTVCRPPRLILASSSRYRRALLERLGIPFDVVSPDLDETPLAGETPAATALRLAGAKARAVAATIDAPDGVLVIGSDQV ATFDGHQIGKPGTHERALAQLVSMQGREVEFHSALCLYDSRTDNAQVEDIVTHVRFRSLPEAELDAYLRAETPYDVAGSA KSEGLGIALLDAIDSDDPTALVGLPLIALTRMLRAADYPLFATTRGDRA
Specific function: Unknown
COG id: COG0424
COG function: function code D; Nucleotide-binding protein implicated in inhibition of septum formation
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the maf family [H]
Homologues:
Organism=Homo sapiens, GI117553627, Length=206, Percent_Identity=30.0970873786408, Blast_Score=70, Evalue=1e-12, Organism=Escherichia coli, GI87081830, Length=187, Percent_Identity=49.7326203208556, Blast_Score=168, Evalue=3e-43, Organism=Escherichia coli, GI1789646, Length=188, Percent_Identity=32.9787234042553, Blast_Score=76, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003697 [H]
Pfam domain/function: PF02545 Maf [H]
EC number: NA
Molecular weight: Translated: 22447; Mature: 22315
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDTVCRPPRLILASSSRYRRALLERLGIPFDVVSPDLDETPLAGETPAATALRLAGAKA CCCCCCCCCEEEEECCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCC RAVAATIDAPDGVLVIGSDQVATFDGHQIGKPGTHERALAQLVSMQGREVEFHSALCLYD EEEEEEECCCCCEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEEEC SRTDNAQVEDIVTHVRFRSLPEAELDAYLRAETPYDVAGSAKSEGLGIALLDAIDSDDPT CCCCCCHHHHHHHHHHHHCCCHHHHHHEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCC ALVGLPLIALTRMLRAADYPLFATTRGDRA HHHHHHHHHHHHHHHHCCCCEEEECCCCCC >Mature Secondary Structure PDTVCRPPRLILASSSRYRRALLERLGIPFDVVSPDLDETPLAGETPAATALRLAGAKA CCCCCCCCEEEEECCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCC RAVAATIDAPDGVLVIGSDQVATFDGHQIGKPGTHERALAQLVSMQGREVEFHSALCLYD EEEEEEECCCCCEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEEEC SRTDNAQVEDIVTHVRFRSLPEAELDAYLRAETPYDVAGSAKSEGLGIALLDAIDSDDPT CCCCCCHHHHHHHHHHHHCCCHHHHHHEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCC ALVGLPLIALTRMLRAADYPLFATTRGDRA HHHHHHHHHHHHHHHHCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA