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The map label for this gene is ydfF [H]

Identifier: 116689110

GI number: 116689110

Start: 1200807

End: 1201514

Strand: Reverse

Name: ydfF [H]

Synonym: Bcen2424_1087

Alternate gene names: 116689110

Gene position: 1201514-1200807 (Counterclockwise)

Preceding gene: 116689111

Following gene: 116689109

Centisome position: 34.49

GC content: 72.74

Gene sequence:

>708_bases
ATGACTGACCAAGACGACCACCATTTTCCGGGCCTGAGCCGCATCGGCGCACTGATCGCCGATCCGGGCCGCGCCGCGAT
GCTGTGGGTGCTGATGGACGGCAGCGCACGGCCGGCCGGCGAGCTGACGATGATCGCGGGGCTGTCGCCGTCCGCGGCCA
GCGCGCACCTCGCGCGCCTGACCGAGGGCGGCCTGCTGGCCTTGGACGTGCGCGGCCGGCATCGCTACTACCGCATTGCG
TCGGCCGACATCGCGGCCTCGCTCGAAGCGCTGGCGAACGTCGCCCGCGCGGCCGCGCCGCATCGCCCGGTTCCGCCGCC
GTCGCGCGCGGTTCCGGCCGAACTGCGCTACGCACGTACCTGCTACGACCACATGGCCGGCGAACTCGCGGTACGCATCT
TCGACGGTCTCACCGCGCGCGGCTGGCTGCTCGCCAACGGCGACGCGATCGACACCACCGAGCTCGGCACGCAGGCGCTC
GCGCAATGGGGCATCGATGTCGCGCAGCAACGCGCGCGCCGACGCCGATTCGCGTGCGGCTGTCTCGACTGGAGCGAACG
GCGCTCGCATCTCGGCGGCGCCCTCGGCGCGGCGCTGCTCGACAGCTTCTGCGCCCACGGCTGGATCGAACGCGCTGCCC
GCCCGCGCGTGCTGCGCGTCACGGTGCCCGGGCAGCAGGTTTTCGACGCGTGGCTTACGTCCGCTTGA

Upstream 100 bases:

>100_bases
CGGCGTCAAAACCGCTGCATCCGACATTTCATCCGGAAGCGAAACATCGAATGCGCGCACGAACTACACTGCCTCTCATC
CCGCTCGACGAGACACGACG

Downstream 100 bases:

>100_bases
CGCCGGCATTGCAGCTGCACGACAACGGCGCGCGATGGACAGGTTTTGTTACATCGCGTGCCATTCGATTTACAAAACAC
CGTGCCTTGAAACAGGCCAA

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MTDQDDHHFPGLSRIGALIADPGRAAMLWVLMDGSARPAGELTMIAGLSPSAASAHLARLTEGGLLALDVRGRHRYYRIA
SADIAASLEALANVARAAAPHRPVPPPSRAVPAELRYARTCYDHMAGELAVRIFDGLTARGWLLANGDAIDTTELGTQAL
AQWGIDVAQQRARRRRFACGCLDWSERRSHLGGALGAALLDSFCAHGWIERAARPRVLRVTVPGQQVFDAWLTSA

Sequences:

>Translated_235_residues
MTDQDDHHFPGLSRIGALIADPGRAAMLWVLMDGSARPAGELTMIAGLSPSAASAHLARLTEGGLLALDVRGRHRYYRIA
SADIAASLEALANVARAAAPHRPVPPPSRAVPAELRYARTCYDHMAGELAVRIFDGLTARGWLLANGDAIDTTELGTQAL
AQWGIDVAQQRARRRRFACGCLDWSERRSHLGGALGAALLDSFCAHGWIERAARPRVLRVTVPGQQVFDAWLTSA
>Mature_234_residues
TDQDDHHFPGLSRIGALIADPGRAAMLWVLMDGSARPAGELTMIAGLSPSAASAHLARLTEGGLLALDVRGRHRYYRIAS
ADIAASLEALANVARAAAPHRPVPPPSRAVPAELRYARTCYDHMAGELAVRIFDGLTARGWLLANGDAIDTTELGTQALA
QWGIDVAQQRARRRRFACGCLDWSERRSHLGGALGAALLDSFCAHGWIERAARPRVLRVTVPGQQVFDAWLTSA

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 25275; Mature: 25144

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQDDHHFPGLSRIGALIADPGRAAMLWVLMDGSARPAGELTMIAGLSPSAASAHLARL
CCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHH
TEGGLLALDVRGRHRYYRIASADIAASLEALANVARAAAPHRPVPPPSRAVPAELRYART
CCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
CYDHMAGELAVRIFDGLTARGWLLANGDAIDTTELGTQALAQWGIDVAQQRARRRRFACG
HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
CLDWSERRSHLGGALGAALLDSFCAHGWIERAARPRVLRVTVPGQQVFDAWLTSA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCC
>Mature Secondary Structure 
TDQDDHHFPGLSRIGALIADPGRAAMLWVLMDGSARPAGELTMIAGLSPSAASAHLARL
CCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHH
TEGGLLALDVRGRHRYYRIASADIAASLEALANVARAAAPHRPVPPPSRAVPAELRYART
CCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
CYDHMAGELAVRIFDGLTARGWLLANGDAIDTTELGTQALAQWGIDVAQQRARRRRFACG
HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
CLDWSERRSHLGGALGAALLDSFCAHGWIERAARPRVLRVTVPGQQVFDAWLTSA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]