| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is tyrC [H]
Identifier: 116689067
GI number: 116689067
Start: 1158219
End: 1159208
Strand: Direct
Name: tyrC [H]
Synonym: Bcen2424_1044
Alternate gene names: 116689067
Gene position: 1158219-1159208 (Clockwise)
Preceding gene: 116689066
Following gene: 116689068
Centisome position: 33.24
GC content: 71.21
Gene sequence:
>990_bases TTGCCCGGAATCTGGAATTCCGCATGCGGGGCGTCGTCCTGCACGCGTAACTTGGCTCTTGTCGTGTCAGGCTTTGCATT CAACAAACTGGTCATCTTCGGCGTCGGCCTGATCGGCGGATCGCTGGCCCGCGCGCTGCGCGAGCGCGCGCCGGGCGGCG CGGGCGAGATCGTCGGCGTGGGCCGTTCGCGCGCGTCGGTCGAGCGCGCGCTGTCGCTCGGCGTGATCGATCGCGCGGCG GCGCTCGACGACGACGCGCAGTTGCGCGACGCGCTCGCCGGCGCCGATCTCGTCCTGCTGGCCGCGCCCGTCGCGCAGAC GGGCCCGTTGCTCGCGCGCATCGCGCCGTGGCTCGACGGCGCGACGATCGTCACCGATGCAGGCAGCACCAAGTCAGATG TCGTCGCGGCCGCGCGCGACGCGCTCGGCGCGCGGATCGCGCAGTTCGTGCCGGGTCATCCGATCGCGGGGCGCGAGTCG AGCGGCGTCGAGGCGGCGTTGCCCGACCTCTACGTCGGCCGCAACGTCGTGCTGTGCCCGCTGCCGGAGAACGCGCCCGA CGCGGTCGCCCGGATCGACGCGATGTGGCGCGCGACCGGCGCCGACGTGCGCACGATGAGCACCGAACAGCACGATCGCG TGTTTGCGTCGATCAGCCATCTGCCGCACGTGCTGTCGTTCGCGCTCGTCGAGCAGATTCTCGGCGAGGCCGACGCGGAG CTGAAATTCTCGTACGCGGCCGGTGGTTTCCGCGATTTCACGCGCATCGCGGCGTCGAACCCGGAAATGTGGCGCGACGT GTGCGTCGCCAACCGTGCGGCGCTGCTCGACGAACTCGACGGCTACACGCGCGTGCTCACGCGCCTGCGCGCGGCGATCG ACGCCGGTGACGGCGCGGCGCTCGAAGCCGTATTCACGCGCTCGCGCGCCGCACGCAAGGCATGGCAGGAACGCGGCGGC ACGCCCGCTGCCGAACCGGTCAAGAAATAA
Upstream 100 bases:
>100_bases GGGGCAGGCGTCGTGGCCGGGCGGGCAGGGCAGGCCGGTCGGCGCTGCCGAAGGCGGGTTCGGGCGGTATCCGGTGCAGG TTGCGCCGGGTGCGCGCCCG
Downstream 100 bases:
>100_bases CAGGACGATTCCCATGGACTACCTCGATCTCGGCCCGTACTCCAGCGCATCGGGCACCGTGCGCCTGCCCGGCTCGAAGA GCATTTCGAACCGCGTGCTG
Product: prephenate dehydrogenase
Products: NA
Alternate protein names: Arogenate dehydrogenase; ADH; Cyclohexadienyl dehydrogenase; Prephenate dehydrogenase; PDH [H]
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MPGIWNSACGASSCTRNLALVVSGFAFNKLVIFGVGLIGGSLARALRERAPGGAGEIVGVGRSRASVERALSLGVIDRAA ALDDDAQLRDALAGADLVLLAAPVAQTGPLLARIAPWLDGATIVTDAGSTKSDVVAAARDALGARIAQFVPGHPIAGRES SGVEAALPDLYVGRNVVLCPLPENAPDAVARIDAMWRATGADVRTMSTEQHDRVFASISHLPHVLSFALVEQILGEADAE LKFSYAAGGFRDFTRIAASNPEMWRDVCVANRAALLDELDGYTRVLTRLRAAIDAGDGAALEAVFTRSRAARKAWQERGG TPAAEPVKK
Sequences:
>Translated_329_residues MPGIWNSACGASSCTRNLALVVSGFAFNKLVIFGVGLIGGSLARALRERAPGGAGEIVGVGRSRASVERALSLGVIDRAA ALDDDAQLRDALAGADLVLLAAPVAQTGPLLARIAPWLDGATIVTDAGSTKSDVVAAARDALGARIAQFVPGHPIAGRES SGVEAALPDLYVGRNVVLCPLPENAPDAVARIDAMWRATGADVRTMSTEQHDRVFASISHLPHVLSFALVEQILGEADAE LKFSYAAGGFRDFTRIAASNPEMWRDVCVANRAALLDELDGYTRVLTRLRAAIDAGDGAALEAVFTRSRAARKAWQERGG TPAAEPVKK >Mature_328_residues PGIWNSACGASSCTRNLALVVSGFAFNKLVIFGVGLIGGSLARALRERAPGGAGEIVGVGRSRASVERALSLGVIDRAAA LDDDAQLRDALAGADLVLLAAPVAQTGPLLARIAPWLDGATIVTDAGSTKSDVVAAARDALGARIAQFVPGHPIAGRESS GVEAALPDLYVGRNVVLCPLPENAPDAVARIDAMWRATGADVRTMSTEQHDRVFASISHLPHVLSFALVEQILGEADAEL KFSYAAGGFRDFTRIAASNPEMWRDVCVANRAALLDELDGYTRVLTRLRAAIDAGDGAALEAVFTRSRAARKAWQERGGT PAAEPVKK
Specific function: Is competent to function as either prephenate dehydrogenase or as arogenate dehydrogenase [H]
COG id: COG0287
COG function: function code E; Prephenate dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 prephenate/arogenate dehydrogenase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR016040 - InterPro: IPR003099 [H]
Pfam domain/function: PF02153 PDH [H]
EC number: =1.3.1.43; =1.3.1.12 [H]
Molecular weight: Translated: 34355; Mature: 34224
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGIWNSACGASSCTRNLALVVSGFAFNKLVIFGVGLIGGSLARALRERAPGGAGEIVGV CCCCCCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEC GRSRASVERALSLGVIDRAAALDDDAQLRDALAGADLVLLAAPVAQTGPLLARIAPWLDG CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHCCC ATIVTDAGSTKSDVVAAARDALGARIAQFVPGHPIAGRESSGVEAALPDLYVGRNVVLCP CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCHHHCCEEEEEE LPENAPDAVARIDAMWRATGADVRTMSTEQHDRVFASISHLPHVLSFALVEQILGEADAE CCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LKFSYAAGGFRDFTRIAASNPEMWRDVCVANRAALLDELDGYTRVLTRLRAAIDAGDGAA EEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHH LEAVFTRSRAARKAWQERGGTPAAEPVKK HHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure PGIWNSACGASSCTRNLALVVSGFAFNKLVIFGVGLIGGSLARALRERAPGGAGEIVGV CCCCCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEC GRSRASVERALSLGVIDRAAALDDDAQLRDALAGADLVLLAAPVAQTGPLLARIAPWLDG CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHCCC ATIVTDAGSTKSDVVAAARDALGARIAQFVPGHPIAGRESSGVEAALPDLYVGRNVVLCP CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCHHHCCEEEEEE LPENAPDAVARIDAMWRATGADVRTMSTEQHDRVFASISHLPHVLSFALVEQILGEADAE CCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LKFSYAAGGFRDFTRIAASNPEMWRDVCVANRAALLDELDGYTRVLTRLRAAIDAGDGAA EEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHH LEAVFTRSRAARKAWQERGGTPAAEPVKK HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7916685 [H]