| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689048
Identifier: 116689048
GI number: 116689048
Start: 1134276
End: 1134974
Strand: Direct
Name: 116689048
Synonym: Bcen2424_1025
Alternate gene names: NA
Gene position: 1134276-1134974 (Clockwise)
Preceding gene: 116689047
Following gene: 116689050
Centisome position: 32.56
GC content: 66.38
Gene sequence:
>699_bases TTGGCTTTCCGAAACTTTTCCCCTGCACGATGCGCAACGTGGATCGTTGCACTGGTTGCCTGCGCGCAAGCGGGCACGGC CTGGTCCGCCGAGGCAACCGCCCCCGTCGCCGGTACGCGTCCGGCGGTCACGAGCCTGAGCGGCAGCGCGTCGCCTGCGG CATCGGCCGCGGCCGAGACGGACGCCGCCGCGCAAGGCAACGTCGCCGAGCTGACGCAGATGCTGCACGACGGCCGGATC GTCGAGATGCGTACGACGTACAACGGCAGCTACGGCGCGAGCCTGATGTTCGATCCGCGCGAGATGACGTATTACGTCGC GCTGTTCCAGGACAAGAACCTGTGGCGCGTGATCCGTTCGCAGGAAAAGAATCGCGCGGAGATGGTGTACGCGAACTTCG TCCAGCAGACCGCGCAGCTCGCCGATATCGAGATCCGCCGGACCGAGCTGCAGGCGCAGAAGGCATTTCTCGAACGCGTG ATCGCGTTGCAGGCGAATCGTGCGCAGCAGTTGCAGGCCGACCTGAGCGTCGCGCGCAGCCAGCAGGCCGAAGTCGCGCA GCGGCAGCGGTCGGCGCAGGAGCAGGCCCAGGCGCTGCAAGTCGAGAAGCGGGCTGCGCAGTTGCAATTGCGCGATCTGC AGGAGCAGGTGCGGCAACTCGAGAGACAGACCGAGACGGGGCTGCCCATGCACAAGTAA
Upstream 100 bases:
>100_bases GTGTTGGACGAAGGCTGGCCGCGTCCCGATAAATTCGAGATGCGGCCGTTTCGTTTTGAACGATAATCGCGAGTTCCGAT TCGTTCGCCGGAGTCTGACG
Downstream 100 bases:
>100_bases CGATTCGTCGAACGGACGGAGCGAGACGAACGAAAACCCGGCGAAGCGATCTTCGCCGGGTTTTTTATTGCGCGGGCGTC AGTGCGCGAACGCGTCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; Exported Lipoprotein; Molecular Chaperone; Exported Protein
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MAFRNFSPARCATWIVALVACAQAGTAWSAEATAPVAGTRPAVTSLSGSASPAASAAAETDAAAQGNVAELTQMLHDGRI VEMRTTYNGSYGASLMFDPREMTYYVALFQDKNLWRVIRSQEKNRAEMVYANFVQQTAQLADIEIRRTELQAQKAFLERV IALQANRAQQLQADLSVARSQQAEVAQRQRSAQEQAQALQVEKRAAQLQLRDLQEQVRQLERQTETGLPMHK
Sequences:
>Translated_232_residues MAFRNFSPARCATWIVALVACAQAGTAWSAEATAPVAGTRPAVTSLSGSASPAASAAAETDAAAQGNVAELTQMLHDGRI VEMRTTYNGSYGASLMFDPREMTYYVALFQDKNLWRVIRSQEKNRAEMVYANFVQQTAQLADIEIRRTELQAQKAFLERV IALQANRAQQLQADLSVARSQQAEVAQRQRSAQEQAQALQVEKRAAQLQLRDLQEQVRQLERQTETGLPMHK >Mature_231_residues AFRNFSPARCATWIVALVACAQAGTAWSAEATAPVAGTRPAVTSLSGSASPAASAAAETDAAAQGNVAELTQMLHDGRIV EMRTTYNGSYGASLMFDPREMTYYVALFQDKNLWRVIRSQEKNRAEMVYANFVQQTAQLADIEIRRTELQAQKAFLERVI ALQANRAQQLQADLSVARSQQAEVAQRQRSAQEQAQALQVEKRAAQLQLRDLQEQVRQLERQTETGLPMHK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25656; Mature: 25525
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFRNFSPARCATWIVALVACAQAGTAWSAEATAPVAGTRPAVTSLSGSASPAASAAAET CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHC DAAAQGNVAELTQMLHDGRIVEMRTTYNGSYGASLMFDPREMTYYVALFQDKNLWRVIRS CCCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCEEEECHHHHEEEEEEECCCHHHHHHHH QEKNRAEMVYANFVQQTAQLADIEIRRTELQAQKAFLERVIALQANRAQQLQADLSVARS HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH QQAEVAQRQRSAQEQAQALQVEKRAAQLQLRDLQEQVRQLERQTETGLPMHK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AFRNFSPARCATWIVALVACAQAGTAWSAEATAPVAGTRPAVTSLSGSASPAASAAAET CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHC DAAAQGNVAELTQMLHDGRIVEMRTTYNGSYGASLMFDPREMTYYVALFQDKNLWRVIRS CCCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCEEEECHHHHEEEEEEECCCHHHHHHHH QEKNRAEMVYANFVQQTAQLADIEIRRTELQAQKAFLERVIALQANRAQQLQADLSVARS HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH QQAEVAQRQRSAQEQAQALQVEKRAAQLQLRDLQEQVRQLERQTETGLPMHK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA