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The map label for this gene is rph [H]

Identifier: 116689020

GI number: 116689020

Start: 1103897

End: 1104637

Strand: Reverse

Name: rph [H]

Synonym: Bcen2424_0997

Alternate gene names: 116689020

Gene position: 1104637-1103897 (Counterclockwise)

Preceding gene: 116689026

Following gene: 116689019

Centisome position: 31.71

GC content: 70.04

Gene sequence:

>741_bases
ATGACGTCTTCCGTTTCCCGCCCGAGCGGCCGCCGCGCCGACGAACTGCGCAAGGTCGCCCTCACGCGCCACTACACGAA
ACACGCCGAAGGCTCCGTGCTGGTCGAATTCGGCGATACCAAGGTGCTCTGCACCGCGAGCGTCGCCGAGCGCGTGCCCG
AATTCCTGCGCGAGCGCGGGCAAGGCTGGCTGACCGCCGAATACGGGATGCTGCCGCGCGCGACCCACACGCGCAGCGAC
CGTGAGGCCGCACGCGGCAAGCAGACGGGCCGCACGCAGGAAATTCAGCGCCTGATCGGCCGCGCGCTGCGCGCGGTGTT
CGATCTCGAGGCGCTCGGCCCGCGCACGATCCATATCGACTGCGACGTGATCCAGGCCGACGGCGGCACGCGCACGGCCA
GCATCACCGGCGCGTTCGTCGCCGCGCACGACGCCGTGTCGACGCTGATCGCGGCCGGCAAGCTCGCGCGCTCGCCGATC
ACCGACCACGTCGCCGCGATCTCGGTCGGCGTGTACGAAGGCGCGCCCGTGCTGGACCTCGACTACGCGGAAGATTCGCG
CTGCGACACCGACATGAACGTCGTGATGACGGGCGCGGGCGGCTTCGTCGAAGTCCAGGGCACCGCCGAAGGCGTGCCGT
TCTCGCGCGCCGAGATGAACGCGCTGCTCGACCTCGCGCAGGGCGGAATCGCCGAGCTGGTGCAGTTGCAGAAGGATGTC
CTGGGTGCGAGCCATGCCTGA

Upstream 100 bases:

>100_bases
GCGGGAAGCGCGCATTATCCCATTTTTGCGGACCACCCCGCCGGGCACGCCCGCCGTTCGGCGCTAAAATCGGGGTTTCC
TCTCCTTCCGCGATTTCCCC

Downstream 100 bases:

>100_bases
CGACCGCACCGTCGCGCCGCTGTCGCGCATCGTTCTCGCGTCGAACAACCCGGGCAAGCTGCGCGAATTCACCGCGCTGT
TCTCGACGGTCGGCATCGAG

Product: ribonuclease PH

Products: NA

Alternate protein names: RNase PH; tRNA nucleotidyltransferase [H]

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTSSVSRPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTAEYGMLPRATHTRSD
REAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQADGGTRTASITGAFVAAHDAVSTLIAAGKLARSPI
TDHVAAISVGVYEGAPVLDLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDV
LGASHA

Sequences:

>Translated_246_residues
MTSSVSRPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTAEYGMLPRATHTRSD
REAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQADGGTRTASITGAFVAAHDAVSTLIAAGKLARSPI
TDHVAAISVGVYEGAPVLDLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDV
LGASHA
>Mature_245_residues
TSSVSRPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTAEYGMLPRATHTRSDR
EAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQADGGTRTASITGAFVAAHDAVSTLIAAGKLARSPIT
DHVAAISVGVYEGAPVLDLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVL
GASHA

Specific function: Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates [H]

COG id: COG0689

COG function: function code J; RNase PH

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase PH family [H]

Homologues:

Organism=Escherichia coli, GI157672248, Length=209, Percent_Identity=67.9425837320574, Blast_Score=290, Evalue=5e-80,
Organism=Caenorhabditis elegans, GI71981632, Length=185, Percent_Identity=28.1081081081081, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001247
- InterPro:   IPR015847
- InterPro:   IPR020568
- InterPro:   IPR002381
- InterPro:   IPR018336 [H]

Pfam domain/function: PF01138 RNase_PH; PF03725 RNase_PH_C [H]

EC number: =2.7.7.56 [H]

Molecular weight: Translated: 26227; Mature: 26096

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS01277 RIBONUCLEASE_PH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSVSRPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERG
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHC
QGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHID
CCEEEECCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
CDVIQADGGTRTASITGAFVAAHDAVSTLIAAGKLARSPITDHVAAISVGVYEGAPVLDL
EEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEECCCCEEEE
DYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDV
CCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
LGASHA
HCCCCC
>Mature Secondary Structure 
TSSVSRPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERG
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHC
QGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHID
CCEEEECCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
CDVIQADGGTRTASITGAFVAAHDAVSTLIAAGKLARSPITDHVAAISVGVYEGAPVLDL
EEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEECCCCEEEE
DYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDV
CCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
LGASHA
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA