| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is alkB1 [H]
Identifier: 116689003
GI number: 116689003
Start: 1090107
End: 1091261
Strand: Reverse
Name: alkB1 [H]
Synonym: Bcen2424_0980
Alternate gene names: 116689003
Gene position: 1091261-1090107 (Counterclockwise)
Preceding gene: 116689011
Following gene: 116689001
Centisome position: 31.32
GC content: 65.63
Gene sequence:
>1155_bases ATGACCAACGCATCGGCCTCGGGCTGGTCGGATGGCAAGCGTTATCTGTGGCTGCTCGGCGCGCTGACGATCACGCTGCC GATCCTCGCCGCACAGCTTGCGCTGTCGACGGGCCTTCACGTGTTCTGGTGGTTCGGCCCGCTGTTCGCGTTCGGCGTGA TCCCGATCCTCGACACGCTGATCGGCGACGATCGCGACAATCCGCCCGAAGCCGTCGTGCCGCACCTCGAACGCGAACGC TATTACCGGTACATCGTTTATCTCGCGACTGTCGTCGAATACGTCGCCTTCTTCATGTGCGTGTGGATCGTCGGCACGCA TGCGCTCGCGTGGTACGACTACGTCGGCTTCGCGCTGTCGCTCGGCGCCGCGACGGGCATCTCGATCAATACCGCGCACG AGCTCGGGCACAAGACCGACCGCTTCGAACGCTGGCTCGCGAAGATCACGCTGGCGCCGGTCGCGTACGGGCACTTCTAC GTCGAGCACAATCGCGGCCATCACGTGCGCGTCGCGACTGCCGAGGACCCGGCAAGCGCGCGCTACGGCGAGTCGTTCTG GGCGTTCCTGCCACGCACGGTGGCGGGCAGCATCCGCTCCGCGTGGCGGCTCGAGAAAGGCCGCCTCGAGCGGCTCGGAC ATTCGCCGTGGACCTGGCGCAACGAAGTGCTGCACGCGTGGGCGATGACCGCCGTCGTATGGGGCATCGCGATCGCGCTG GCCGGCAAGGTCGTGATCCCGTTCCTCGTGATCCAGGCCGTCTACGGCGCGTCGCTGCTCGAGGTGGTGAACTACGTCGA GCACTACGGGCTCGGCCGTCGCAAGCTGCCGAGCGGCCGCTACGAACGCTGCACGCCGCAGCATTCGTGGAACAGCAATC ACGTCGTCACGAACCTGTTCCTGTATCAGTTACAGCGACACGCCGACCATCACGCGAATCCGACGCGCTCTTACCAGGCG CTGCGCCACTTCGACGATGCGCCGCAATTGCCGGCCGGCTACGCGACGATGATCCTGTTCGCGTACGTGCCGCCGCTCTG GTATCGCGTGATGAATCCACGCGTCGTCGCGCACTATCGCGGCGACATGGCGCAGTCGAACATCAAGCCGTCGATCCGCG ACAAGGTGCTGGCGCAATATCCGGCTGCGGCGTGA
Upstream 100 bases:
>100_bases CAACGATCCGGTGCCACCACGCGCGTCGCGGACCACGAGGATTCGAACAATCTTGCATGCGGCCACCCGCGGGCCGGCCG ACTGGAGGGAGACAATGGCA
Downstream 100 bases:
>100_bases TGGTTCGGTGAGGGCTGCGTAGAAGATGGACGCCGCTTGAAACGGTCGGCGCACCGGCTTCCGGTTTGGCACGCGTGCGC GGTGCGGCAGCCATGCGACA
Product: alkane 1-monooxygenase
Products: NA
Alternate protein names: Alkane hydroxylase; AHs; Terminal alkane hydroxylase [H]
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MTNASASGWSDGKRYLWLLGALTITLPILAAQLALSTGLHVFWWFGPLFAFGVIPILDTLIGDDRDNPPEAVVPHLERER YYRYIVYLATVVEYVAFFMCVWIVGTHALAWYDYVGFALSLGAATGISINTAHELGHKTDRFERWLAKITLAPVAYGHFY VEHNRGHHVRVATAEDPASARYGESFWAFLPRTVAGSIRSAWRLEKGRLERLGHSPWTWRNEVLHAWAMTAVVWGIAIAL AGKVVIPFLVIQAVYGASLLEVVNYVEHYGLGRRKLPSGRYERCTPQHSWNSNHVVTNLFLYQLQRHADHHANPTRSYQA LRHFDDAPQLPAGYATMILFAYVPPLWYRVMNPRVVAHYRGDMAQSNIKPSIRDKVLAQYPAAA
Sequences:
>Translated_384_residues MTNASASGWSDGKRYLWLLGALTITLPILAAQLALSTGLHVFWWFGPLFAFGVIPILDTLIGDDRDNPPEAVVPHLERER YYRYIVYLATVVEYVAFFMCVWIVGTHALAWYDYVGFALSLGAATGISINTAHELGHKTDRFERWLAKITLAPVAYGHFY VEHNRGHHVRVATAEDPASARYGESFWAFLPRTVAGSIRSAWRLEKGRLERLGHSPWTWRNEVLHAWAMTAVVWGIAIAL AGKVVIPFLVIQAVYGASLLEVVNYVEHYGLGRRKLPSGRYERCTPQHSWNSNHVVTNLFLYQLQRHADHHANPTRSYQA LRHFDDAPQLPAGYATMILFAYVPPLWYRVMNPRVVAHYRGDMAQSNIKPSIRDKVLAQYPAAA >Mature_383_residues TNASASGWSDGKRYLWLLGALTITLPILAAQLALSTGLHVFWWFGPLFAFGVIPILDTLIGDDRDNPPEAVVPHLERERY YRYIVYLATVVEYVAFFMCVWIVGTHALAWYDYVGFALSLGAATGISINTAHELGHKTDRFERWLAKITLAPVAYGHFYV EHNRGHHVRVATAEDPASARYGESFWAFLPRTVAGSIRSAWRLEKGRLERLGHSPWTWRNEVLHAWAMTAVVWGIAIALA GKVVIPFLVIQAVYGASLLEVVNYVEHYGLGRRKLPSGRYERCTPQHSWNSNHVVTNLFLYQLQRHADHHANPTRSYQAL RHFDDAPQLPAGYATMILFAYVPPLWYRVMNPRVVAHYRGDMAQSNIKPSIRDKVLAQYPAAA
Specific function: Catalyzes the hydroxylation of n-alkanes and fatty acids in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases C5-C12 hydrocarbones [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fatty acid desaturase family. AlkB subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005804 [H]
Pfam domain/function: PF00487 FA_desaturase [H]
EC number: =1.14.15.3 [H]
Molecular weight: Translated: 43479; Mature: 43348
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNASASGWSDGKRYLWLLGALTITLPILAAQLALSTGLHVFWWFGPLFAFGVIPILDTL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH IGDDRDNPPEAVVPHLERERYYRYIVYLATVVEYVAFFMCVWIVGTHALAWYDYVGFALS HCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGAATGISINTAHELGHKTDRFERWLAKITLAPVAYGHFYVEHNRGHHVRVATAEDPASA HCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCEEEEEECCCCCCH RYGESFWAFLPRTVAGSIRSAWRLEKGRLERLGHSPWTWRNEVLHAWAMTAVVWGIAIAL HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AGKVVIPFLVIQAVYGASLLEVVNYVEHYGLGRRKLPSGRYERCTPQHSWNSNHVVTNLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LYQLQRHADHHANPTRSYQALRHFDDAPQLPAGYATMILFAYVPPLWYRVMNPRVVAHYR HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEC GDMAQSNIKPSIRDKVLAQYPAAA CCHHHCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure TNASASGWSDGKRYLWLLGALTITLPILAAQLALSTGLHVFWWFGPLFAFGVIPILDTL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH IGDDRDNPPEAVVPHLERERYYRYIVYLATVVEYVAFFMCVWIVGTHALAWYDYVGFALS HCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGAATGISINTAHELGHKTDRFERWLAKITLAPVAYGHFYVEHNRGHHVRVATAEDPASA HCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCEEEEEECCCCCCH RYGESFWAFLPRTVAGSIRSAWRLEKGRLERLGHSPWTWRNEVLHAWAMTAVVWGIAIAL HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AGKVVIPFLVIQAVYGASLLEVVNYVEHYGLGRRKLPSGRYERCTPQHSWNSNHVVTNLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LYQLQRHADHHANPTRSYQALRHFDDAPQLPAGYATMILFAYVPPLWYRVMNPRVVAHYR HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEC GDMAQSNIKPSIRDKVLAQYPAAA CCHHHCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA