| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688991
Identifier: 116688991
GI number: 116688991
Start: 1075820
End: 1077067
Strand: Direct
Name: 116688991
Synonym: Bcen2424_0968
Alternate gene names: NA
Gene position: 1075820-1077067 (Clockwise)
Preceding gene: 116688987
Following gene: 116688992
Centisome position: 30.88
GC content: 65.95
Gene sequence:
>1248_bases ATGAAAGTTCGCTCGATCATGGGCGCGCTCTGCGCCGCGGGTCTGATGGCTGGCGCCGTGGCGGCGCAGGCAGCCGAGAA CGTAACCGTGCTGCACTGGTGGACCTCGGGCGGCGAGTCGAAGGCCGTCGGCGTGCTGAAGGACGACCTGCAGAAGCAGG GCTACGTGTGGAAGGACTTCGCGGTCGCGGGCGGCGCCGGCGCCGCGGCGATGACCGCGCTGAAGACCAAGGTGATCAGC GGCGATTCCCCGTCGGCCGCGCAGATCAAGGGCCCGCTGATCCAGGACTGGGCCGACCAGGGCGTGCTCGTCAACATCGA TTCGGCCGCCGGCGACTGGAAGCAGAACCTGCCGCCGGAAATCGACAAGATCATCAAGTACAAGGGCCATACCGTCGCCG CGCCGTTCTCGGTGCACCGCGTCAACTGGCTGTACATCAACAAGGCCGCGCTCGACAAGGTCGGCGCGAAGGTGCCGACC ACCTGGCCCGAATTCTTCGCGGTGGCCGACAAGCTGAAGGCCGCGGGCATCCAGCCGGTCGCGATGGGCGGCCAGCCGTG GCAGGACCTGACGCTGTGGGAAGACGTCGTGCTGTCGCAGGGCCCGGCGTTCTACAAGAAGGCGCTGGTCGACCTCGACC AGGCGACGCTGACGTCGCCGCAGATGCTGTCGGTGTTCGACACGGTGCGCAAGATCCAGGGCTACTTCGACACCGGCCGT AACGGCCGCGACTGGAACCTCGCGACCGCGATGGTCATCAACGGCAAGGCCGGCATGCAGTTCATGGGCGACTGGGCGAA GGGCGAATTCGAAAACGCCGGCAAGAAGGCGGGCAAGGACTACATCTGCGCGCCGGTGCCGGGCACCGCGAATTCGTACA CGTTCAACGTCGATTCGTTCGTGTTCTTCCAGCAGAAGGGCGAGAAGAACGCGACGCCGGGCCAGCTCGCGCTCGCGAAG ACGATCATGACGCCCGAGTTCCAGGAGCAGTTCAGCCTGCTGAAGGGCTCGGTGCCGGTGCGTCTCGGCGTGAAGATGGA CAAGTTCGACGACTGCGCGAAGAAGTCGTATGCCGACGAGCAGACCGCGATCAAGTCGGGCGGCTTCGTGCCGTCGCTCG CGCACGGCATGGCGCAAGGCGACGCGACTGCCGGCGCGATCACCGACGTCGTGACGAAGTTCATGAACTCGCAGCAGGAT TCGAAGAGCGCGGTCGCCGCGCTCGCGAAGGCCGCGAAGGTCAAGTAA
Upstream 100 bases:
>100_bases GCTGCATGCGTCCCGCGGCTCGATTTCCCCGTCGTTTATCAAGAAGCCGGTTCCCCGTCGGGGAACCTCACGAGTTGATT CAGTCTGGAGGAGATAAGTA
Downstream 100 bases:
>100_bases CGCGCGCCAGGCGCCCGGCCGGACACGCTTCATCGGCCGGGCGTTTTTGCATGTGCAGCAAACGGGCTCGCCCGCGGGCC CGTGCCGTACCCGGCGCCGG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: Immunogenic 39 kDa protein; P39 [H]
Number of amino acids: Translated: 415; Mature: 415
Protein sequence:
>415_residues MKVRSIMGALCAAGLMAGAVAAQAAENVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDFAVAGGAGAAAMTALKTKVIS GDSPSAAQIKGPLIQDWADQGVLVNIDSAAGDWKQNLPPEIDKIIKYKGHTVAAPFSVHRVNWLYINKAALDKVGAKVPT TWPEFFAVADKLKAAGIQPVAMGGQPWQDLTLWEDVVLSQGPAFYKKALVDLDQATLTSPQMLSVFDTVRKIQGYFDTGR NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKAGKDYICAPVPGTANSYTFNVDSFVFFQQKGEKNATPGQLALAK TIMTPEFQEQFSLLKGSVPVRLGVKMDKFDDCAKKSYADEQTAIKSGGFVPSLAHGMAQGDATAGAITDVVTKFMNSQQD SKSAVAALAKAAKVK
Sequences:
>Translated_415_residues MKVRSIMGALCAAGLMAGAVAAQAAENVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDFAVAGGAGAAAMTALKTKVIS GDSPSAAQIKGPLIQDWADQGVLVNIDSAAGDWKQNLPPEIDKIIKYKGHTVAAPFSVHRVNWLYINKAALDKVGAKVPT TWPEFFAVADKLKAAGIQPVAMGGQPWQDLTLWEDVVLSQGPAFYKKALVDLDQATLTSPQMLSVFDTVRKIQGYFDTGR NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKAGKDYICAPVPGTANSYTFNVDSFVFFQQKGEKNATPGQLALAK TIMTPEFQEQFSLLKGSVPVRLGVKMDKFDDCAKKSYADEQTAIKSGGFVPSLAHGMAQGDATAGAITDVVTKFMNSQQD SKSAVAALAKAAKVK >Mature_415_residues MKVRSIMGALCAAGLMAGAVAAQAAENVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDFAVAGGAGAAAMTALKTKVIS GDSPSAAQIKGPLIQDWADQGVLVNIDSAAGDWKQNLPPEIDKIIKYKGHTVAAPFSVHRVNWLYINKAALDKVGAKVPT TWPEFFAVADKLKAAGIQPVAMGGQPWQDLTLWEDVVLSQGPAFYKKALVDLDQATLTSPQMLSVFDTVRKIQGYFDTGR NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKAGKDYICAPVPGTANSYTFNVDSFVFFQQKGEKNATPGQLALAK TIMTPEFQEQFSLLKGSVPVRLGVKMDKFDDCAKKSYADEQTAIKSGGFVPSLAHGMAQGDATAGAITDVVTKFMNSQQD SKSAVAALAKAAKVK
Specific function: Part of a binding-protein-dependent transport system for a sugar (Potential) [H]
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 44251; Mature: 44251
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVRSIMGALCAAGLMAGAVAAQAAENVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDF CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEHHHHHHHHHCCCEEEEE AVAGGAGAAAMTALKTKVISGDSPSAAQIKGPLIQDWADQGVLVNIDSAAGDWKQNLPPE EECCCCCHHHHHHHHHHEECCCCCCHHHCCCCHHHHHCCCCEEEEECCCCCCHHHCCCHH IDKIIKYKGHTVAAPFSVHRVNWLYINKAALDKVGAKVPTTWPEFFAVADKLKAAGIQPV HHHHHHCCCCEEECCCEEEEEEEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEE AMGGQPWQDLTLWEDVVLSQGPAFYKKALVDLDQATLTSPQMLSVFDTVRKIQGYFDTGR ECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKAGKDYICAPVPGTANSYTFNVDSF CCCCCCEEEEEEEECCCCCHHHCCCCCCCHHHHHHHCCCCEEEECCCCCCCCEEEECCEE VFFQQKGEKNATPGQLALAKTIMTPEFQEQFSLLKGSVPVRLGVKMDKFDDCAKKSYADE EEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCH QTAIKSGGFVPSLAHGMAQGDATAGAITDVVTKFMNSQQDSKSAVAALAKAAKVK HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MKVRSIMGALCAAGLMAGAVAAQAAENVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDF CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEHHHHHHHHHCCCEEEEE AVAGGAGAAAMTALKTKVISGDSPSAAQIKGPLIQDWADQGVLVNIDSAAGDWKQNLPPE EECCCCCHHHHHHHHHHEECCCCCCHHHCCCCHHHHHCCCCEEEEECCCCCCHHHCCCHH IDKIIKYKGHTVAAPFSVHRVNWLYINKAALDKVGAKVPTTWPEFFAVADKLKAAGIQPV HHHHHHCCCCEEECCCEEEEEEEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEE AMGGQPWQDLTLWEDVVLSQGPAFYKKALVDLDQATLTSPQMLSVFDTVRKIQGYFDTGR ECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKAGKDYICAPVPGTANSYTFNVDSF CCCCCCEEEEEEEECCCCCHHHCCCCCCCHHHHHHHCCCCEEEECCCCCCCCEEEECCEE VFFQQKGEKNATPGQLALAKTIMTPEFQEQFSLLKGSVPVRLGVKMDKFDDCAKKSYADE EEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCH QTAIKSGGFVPSLAHGMAQGDATAGAITDVVTKFMNSQQDSKSAVAALAKAAKVK HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9009303; 10235622 [H]