| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116688951
Identifier: 116688951
GI number: 116688951
Start: 1036549
End: 1036917
Strand: Reverse
Name: 116688951
Synonym: Bcen2424_0928
Alternate gene names: NA
Gene position: 1036917-1036549 (Counterclockwise)
Preceding gene: 116688953
Following gene: 116688950
Centisome position: 29.76
GC content: 56.1
Gene sequence:
>369_bases ATGGCTAACTCTTCGAAATTCGGCTTCTTCGATTCGATCTTCTGCGCTCGCGACGTCACATCCAACCTGCCCGAGGGGTA CACGGTCGAATGCATCGAAGAGTACTTCCCTGTATGGCCTGTCGGCTTGCGCGAGGGACCATTCACCATCTGTAGTTACG ATACTGGGGAACAGGTACTTTGCCCGAAGCATCTGACTGAACATAACCCCGCCCGCGCAACTGGCCCTGGCCGCACCGCC GCCGGGATTGTGTGCCACGACTGCAAGACGGTGTATGCGCTGACATGCATTCTTCCCAAGCATCACGAATATAAGAATGT GTGCAACCCTCGCGACGGCGAATTGACGTGCCCGATCACCGGCGAATAA
Upstream 100 bases:
>100_bases GGAATGTACGGTGAGGCTTGCGGCGTCGTTTGCGACGACTGCAAGACTGTCTATACGGCGAGGGAACTCCCCGCGAATGA GTGCTTCGAGGAGACCCTGA
Downstream 100 bases:
>100_bases CACCCGAAATCCGAGTTACCCCATGACAGGGATGATTGCACGGCCGCAATCTCCCTGTCATTAATTTCGCACTCCATAAT TATGTATACCGATCCAATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 122; Mature: 121
Protein sequence:
>122_residues MANSSKFGFFDSIFCARDVTSNLPEGYTVECIEEYFPVWPVGLREGPFTICSYDTGEQVLCPKHLTEHNPARATGPGRTA AGIVCHDCKTVYALTCILPKHHEYKNVCNPRDGELTCPITGE
Sequences:
>Translated_122_residues MANSSKFGFFDSIFCARDVTSNLPEGYTVECIEEYFPVWPVGLREGPFTICSYDTGEQVLCPKHLTEHNPARATGPGRTA AGIVCHDCKTVYALTCILPKHHEYKNVCNPRDGELTCPITGE >Mature_121_residues ANSSKFGFFDSIFCARDVTSNLPEGYTVECIEEYFPVWPVGLREGPFTICSYDTGEQVLCPKHLTEHNPARATGPGRTAA GIVCHDCKTVYALTCILPKHHEYKNVCNPRDGELTCPITGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13486; Mature: 13355
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
7.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 8.2 %Cys+Met (Translated Protein) 7.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANSSKFGFFDSIFCARDVTSNLPEGYTVECIEEYFPVWPVGLREGPFTICSYDTGEQVL CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEE CPKHLTEHNPARATGPGRTAAGIVCHDCKTVYALTCILPKHHEYKNVCNPRDGELTCPIT CCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCHHCCCCCCCCCEEECCC GE CC >Mature Secondary Structure ANSSKFGFFDSIFCARDVTSNLPEGYTVECIEEYFPVWPVGLREGPFTICSYDTGEQVL CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEE CPKHLTEHNPARATGPGRTAAGIVCHDCKTVYALTCILPKHHEYKNVCNPRDGELTCPIT CCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCHHCCCCCCCCCEEECCC GE CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA