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The map label for this gene is rfaC [H]

Identifier: 116688917

GI number: 116688917

Start: 1004281

End: 1005354

Strand: Direct

Name: rfaC [H]

Synonym: Bcen2424_0894

Alternate gene names: 116688917

Gene position: 1004281-1005354 (Clockwise)

Preceding gene: 116688916

Following gene: 116688918

Centisome position: 28.83

GC content: 70.58

Gene sequence:

>1074_bases
TTGTCTGTCCGGTCGTCCGGCCGGGATAAAATCCCCCCTTTATGTCTGTCGCCGGCTGCCAGCCGGCGTTTTTTCAGCGT
GCAAAAGATCCTGATCGTGCGCGTGTCGTCGCTGGGCGACGTCGTGCACAACATGCCGGTGGTCGCCGATATCCGGCGCC
GCCACCCCGATGCGCAGATCGACTGGCTCGTCGAGGAAAGCTTCGTCGACCTCGTGCGGCTCGTCGACGGCGTGCGCAAC
GTGCTGCCGTTCTCGCTGCGCCGCTGGCGCAAGAAACCGTTCTCGGGTGCGACGTGGCGCGAGATTCGCGCATTTCGCCG
GCGCCTCGCGGCCGAGCAGTACGACCTCGTGATCGACTGCCAGGGCCTCATCAAGACGGCGTGGGTCGCGAGCTGGGCGC
GCGGGCCGCTCGTCGGGCTCGGCAACCGGACCGACGGCGCCGGCTACGAATGGCCCGTGCGCTTCTTCTATCGCAAGCGC
GTGCCGATCGCGCCGCGCACGCACGTGGTCGAGCGCTCGCGCCAACTCGTCGCGGCCGCGCTGGACGACCCGGCGCCGAC
CCCGGCCGATCCGGTCGAATTCGGCCTCGACACGCGGGCGGCGGCGCTCGCGGTGGCCGCGCTCGGCCTGAACCTGCCGG
TGCCGTACGTCGTGTTCGTCCACGCGACGTCGCGCGCCGACAAGCAGTGGCCGGACGCCGCCTGGATCGAGCTCGGCCAG
GCGCTCGTGCGGCGCGGCGCGTCGCTCGTGCTGCCGTGGGGCAACGACGCGGAGCGCGCGACCAGCGAGCGGCTCGCGAA
GGAATTCGGCGCGGCGGCGATCGTGCCGCCGAAGCTGTCGCTGCCGGCCGTGGTCGGTCTGATCGACGGCGCGGCCGCGA
CGGTCGGGGTTGATACAGGTCTGGTTCACATCGCGGCCGCGCTGAAGCGTCCGACGGTCGAACTGTACAATTTCGCGACG
GCCTGGCGGACCGGCGGCTACTGGTCGCCGAACGTCGTCAATCTCGGCACGGCGGGGCAACCCCCGTCGATCGCGCAGGT
GAAGTCGGCGCTCGCGGGCTTCGGTCTCCTGTAA

Upstream 100 bases:

>100_bases
TTCTGAGCGCCGGCGGCCGGCGGGCCGCCCGTACGACGGCCGGTTCGTCGGCCGTGTTTGTCTCGAAAAGCGGCGCGTGC
CCCGGGCGCGCGGCCGCTTT

Downstream 100 bases:

>100_bases
CGCTGTCCACACGCGAACCGATCATGAGCGAATCCCAGATCATCGAAGTCCCGTCCGCCGACTGGAGCGGACACAACCTG
TCGGCGCCGCGCGAGCAGTT

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MSVRSSGRDKIPPLCLSPAASRRFFSVQKILIVRVSSLGDVVHNMPVVADIRRRHPDAQIDWLVEESFVDLVRLVDGVRN
VLPFSLRRWRKKPFSGATWREIRAFRRRLAAEQYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYRKR
VPIAPRTHVVERSRQLVAAALDDPAPTPADPVEFGLDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQ
ALVRRGASLVLPWGNDAERATSERLAKEFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFAT
AWRTGGYWSPNVVNLGTAGQPPSIAQVKSALAGFGLL

Sequences:

>Translated_357_residues
MSVRSSGRDKIPPLCLSPAASRRFFSVQKILIVRVSSLGDVVHNMPVVADIRRRHPDAQIDWLVEESFVDLVRLVDGVRN
VLPFSLRRWRKKPFSGATWREIRAFRRRLAAEQYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYRKR
VPIAPRTHVVERSRQLVAAALDDPAPTPADPVEFGLDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQ
ALVRRGASLVLPWGNDAERATSERLAKEFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFAT
AWRTGGYWSPNVVNLGTAGQPPSIAQVKSALAGFGLL
>Mature_356_residues
SVRSSGRDKIPPLCLSPAASRRFFSVQKILIVRVSSLGDVVHNMPVVADIRRRHPDAQIDWLVEESFVDLVRLVDGVRNV
LPFSLRRWRKKPFSGATWREIRAFRRRLAAEQYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYRKRV
PIAPRTHVVERSRQLVAAALDDPAPTPADPVEFGLDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQA
LVRRGASLVLPWGNDAERATSERLAKEFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATA
WRTGGYWSPNVVNLGTAGQPPSIAQVKSALAGFGLL

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=309, Percent_Identity=37.8640776699029, Blast_Score=187, Evalue=7e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38907; Mature: 38776

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRSSGRDKIPPLCLSPAASRRFFSVQKILIVRVSSLGDVVHNMPVVADIRRRHPDAQI
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHH
DWLVEESFVDLVRLVDGVRNVLPFSLRRWRKKPFSGATWREIRAFRRRLAAEQYDLVIDC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEC
QGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYRKRVPIAPRTHVVERSRQLVAAA
HHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LDDPAPTPADPVEFGLDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQ
HCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH
ALVRRGASLVLPWGNDAERATSERLAKEFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTG
HHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHCCCHHEEECHHH
LVHIAAALKRPTVELYNFATAWRTGGYWSPNVVNLGTAGQPPSIAQVKSALAGFGLL
HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVRSSGRDKIPPLCLSPAASRRFFSVQKILIVRVSSLGDVVHNMPVVADIRRRHPDAQI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHH
DWLVEESFVDLVRLVDGVRNVLPFSLRRWRKKPFSGATWREIRAFRRRLAAEQYDLVIDC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEC
QGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYRKRVPIAPRTHVVERSRQLVAAA
HHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LDDPAPTPADPVEFGLDTRAAALAVAALGLNLPVPYVVFVHATSRADKQWPDAAWIELGQ
HCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH
ALVRRGASLVLPWGNDAERATSERLAKEFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTG
HHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHCCCHHEEECHHH
LVHIAAALKRPTVELYNFATAWRTGGYWSPNVVNLGTAGQPPSIAQVKSALAGFGLL
HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1527014; 11677609; 1657881 [H]