| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is xanB [H]
Identifier: 116688902
GI number: 116688902
Start: 982826
End: 984268
Strand: Direct
Name: xanB [H]
Synonym: Bcen2424_0879
Alternate gene names: 116688902
Gene position: 982826-984268 (Clockwise)
Preceding gene: 116688901
Following gene: 116688903
Centisome position: 28.21
GC content: 61.12
Gene sequence:
>1443_bases GTGAACATCTTCCCTGTAGTTCTGTGCGGCGGTAGCGGCACCCGTCTTTGGCCGTTGTCCCGGGGCGGTTATCCCAAGCA GTACCTCAAGCTGGCCGGAGAACACACGCTGGTTCAGCAGACCGTGCTGCGTCTGCAGGGCGTGCCCGGCGTCGAAGCGC CGATCATGATCACGAATGCGGAACAACGCTTCATCGTGGCCGATCAGTTGCGCAGCATCGACGTGACAGCGTCCGCGGTC GTTCTGGAGCCGGTAGGGCGCAATACGGCGCCCGCGGTCGCGGCGGCGGCGTTGCTTGCGATGGAGCAGTCGCCGGACGC GTTGCTGCTCGTGTTGCCGTCCGACCACGTGATCCTGAGCGATGCGATTTTCGCGAAGCTGGCGGACACGGCGCGCGATA TCGCAAACGACGGGCATCTCGTCACGTTCGGTATCGAGCCGACCAAGCCGCACACCGGCTACGGCTACATCCGCAGTGGG AACGCACTGGCATCGCGTGACGACGCGTTCCGTGTCGATGCATTCGTCGAGAAACCGGATGCGGAAACGGCGGCGCGCTT CGTGTCGGAAGGTGGTTATTACTGGAACAGCGGCATGTTCATGCTGAAGGCGTCGGTGTATCTCGACGAACTCAAGCGAT TCGAGCCAGCCGTGCTCGAGCAGGTCACGCTGTCGGTCAAGCAGGCGAAGCGCGACGAGGATTTCGTCCGACTTGACGCC GATGCATTCCAGGAATGCCCGAACATCTCGATCGACTATGCGGTGATGGAGAAAACCGACCATGCGGTGATGGTCGCGGC CGCAGGTCTGAACTGGAGCGATATCGGTTCATGGGCCGCGCTCGCGGATATTTCGGATACCGACGATACGGGCAATACGC TGTCGGGCGACGTCCTGACTGACGATGTTTCCGATAGTTATATCCGGGCCGATCATCGAATGGTCACGGCCATCGGCGTC AAGGATCTGATCATCGTCGAAACGGCGGACGCGGTCCTCGTCACGCATCGCGACCAGTCCGAGCGAGTGAAGAAGATCGT CGAGCGTCTCAGCGCGTCGGGGCGACACGAGTCGGTGACGCACCGGAAGGTCATCCGGCCGTGGGGTTCGTACGAGAGTA TCGATCAGGGTGAACGCTTTCAGGTCAAGCGCATCATCGTCAACCCGGGCTCGTCGCTCAGCCTTCAGATGCACCATCAT CGGGCTGAACACTGGGTCGTTGTCCGCGGTACCGCGCGCGTTTTCAACGGCGACCAGGTCATTTTGCTGAGCGAGAATCA GTCGACCTATATTCCGCTGGGCGTGACGCATCGCTTGCAGAACCCGGGGAAGATTCCGCTCGAACTGATCGAGGTTCAAT CGGGCTCGTATCTCGGTGAAGACGACATCGTGCGCCTCGACGACAACTACGGGCGCGATGTCGTCGCGGCGAAGGGCAAT TAA
Upstream 100 bases:
>100_bases GAGCGCGTGCCCGGCGATGCAGGCCGGATGCCGCCGGAATTAATGAGTGGTACTGATCCGGCGGTTGGAAAAATAGAAGG TATATCGTAACGGAGTTGAC
Downstream 100 bases:
>100_bases CCACGATTGGAATCCGGCCTGGATTCATGTCGCATCGGCCGCTCTCATGGCGTGACCACGATCGACGATTCTGGCCGGAG CTTCAACATGCTGAACAAAC
Product: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
Products: NA
Alternate protein names: Mannose-6-phosphate isomerase; Phosphohexomutase; Phosphomannose isomerase; PMI; Mannose-1-phosphate guanylyl transferase; GDP-mannose pyrophosphorylase; GMP; GMPP [H]
Number of amino acids: Translated: 480; Mature: 480
Protein sequence:
>480_residues MNIFPVVLCGGSGTRLWPLSRGGYPKQYLKLAGEHTLVQQTVLRLQGVPGVEAPIMITNAEQRFIVADQLRSIDVTASAV VLEPVGRNTAPAVAAAALLAMEQSPDALLLVLPSDHVILSDAIFAKLADTARDIANDGHLVTFGIEPTKPHTGYGYIRSG NALASRDDAFRVDAFVEKPDAETAARFVSEGGYYWNSGMFMLKASVYLDELKRFEPAVLEQVTLSVKQAKRDEDFVRLDA DAFQECPNISIDYAVMEKTDHAVMVAAAGLNWSDIGSWAALADISDTDDTGNTLSGDVLTDDVSDSYIRADHRMVTAIGV KDLIIVETADAVLVTHRDQSERVKKIVERLSASGRHESVTHRKVIRPWGSYESIDQGERFQVKRIIVNPGSSLSLQMHHH RAEHWVVVRGTARVFNGDQVILLSENQSTYIPLGVTHRLQNPGKIPLELIEVQSGSYLGEDDIVRLDDNYGRDVVAAKGN
Sequences:
>Translated_480_residues MNIFPVVLCGGSGTRLWPLSRGGYPKQYLKLAGEHTLVQQTVLRLQGVPGVEAPIMITNAEQRFIVADQLRSIDVTASAV VLEPVGRNTAPAVAAAALLAMEQSPDALLLVLPSDHVILSDAIFAKLADTARDIANDGHLVTFGIEPTKPHTGYGYIRSG NALASRDDAFRVDAFVEKPDAETAARFVSEGGYYWNSGMFMLKASVYLDELKRFEPAVLEQVTLSVKQAKRDEDFVRLDA DAFQECPNISIDYAVMEKTDHAVMVAAAGLNWSDIGSWAALADISDTDDTGNTLSGDVLTDDVSDSYIRADHRMVTAIGV KDLIIVETADAVLVTHRDQSERVKKIVERLSASGRHESVTHRKVIRPWGSYESIDQGERFQVKRIIVNPGSSLSLQMHHH RAEHWVVVRGTARVFNGDQVILLSENQSTYIPLGVTHRLQNPGKIPLELIEVQSGSYLGEDDIVRLDDNYGRDVVAAKGN >Mature_480_residues MNIFPVVLCGGSGTRLWPLSRGGYPKQYLKLAGEHTLVQQTVLRLQGVPGVEAPIMITNAEQRFIVADQLRSIDVTASAV VLEPVGRNTAPAVAAAALLAMEQSPDALLLVLPSDHVILSDAIFAKLADTARDIANDGHLVTFGIEPTKPHTGYGYIRSG NALASRDDAFRVDAFVEKPDAETAARFVSEGGYYWNSGMFMLKASVYLDELKRFEPAVLEQVTLSVKQAKRDEDFVRLDA DAFQECPNISIDYAVMEKTDHAVMVAAAGLNWSDIGSWAALADISDTDDTGNTLSGDVLTDDVSDSYIRADHRMVTAIGV KDLIIVETADAVLVTHRDQSERVKKIVERLSASGRHESVTHRKVIRPWGSYESIDQGERFQVKRIIVNPGSSLSLQMHHH RAEHWVVVRGTARVFNGDQVILLSENQSTYIPLGVTHRLQNPGKIPLELIEVQSGSYLGEDDIVRLDDNYGRDVVAAKGN
Specific function: Involved in xanthan production [H]
COG id: COG0836
COG function: function code M; Mannose-1-phosphate guanylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mannose-6-phosphate isomerase type 2 family [H]
Homologues:
Organism=Escherichia coli, GI1788362, Length=475, Percent_Identity=53.6842105263158, Blast_Score=500, Evalue=1e-143,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR006375 - InterPro: IPR001538 - InterPro: IPR005835 - InterPro: IPR014710 [H]
Pfam domain/function: PF01050 MannoseP_isomer; PF00483 NTP_transferase [H]
EC number: =5.3.1.8; =2.7.7.13 [H]
Molecular weight: Translated: 52594; Mature: 52594
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIFPVVLCGGSGTRLWPLSRGGYPKQYLKLAGEHTLVQQTVLRLQGVPGVEAPIMITNA CCEEEEEEECCCCCEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEECC EQRFIVADQLRSIDVTASAVVLEPVGRNTAPAVAAAALLAMEQSPDALLLVLPSDHVILS CCEEEEEHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEH DAIFAKLADTARDIANDGHLVTFGIEPTKPHTGYGYIRSGNALASRDDAFRVDAFVEKPD HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCC AETAARFVSEGGYYWNSGMFMLKASVYLDELKRFEPAVLEQVTLSVKQAKRDEDFVRLDA HHHHHHHHHCCCEEEECCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECH DAFQECPNISIDYAVMEKTDHAVMVAAAGLNWSDIGSWAALADISDTDDTGNTLSGDVLT HHHHHCCCCEEEEEEEECCCCEEEEEEECCCHHHCCCEEEEEECCCCCCCCCEEECCEEE DDVSDSYIRADHRMVTAIGVKDLIIVETADAVLVTHRDQSERVKKIVERLSASGRHESVT CCCCCCCEECCCEEEEEECCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHCCCCCCCHH HRKVIRPWGSYESIDQGERFQVKRIIVNPGSSLSLQMHHHRAEHWVVVRGTARVFNGDQV HHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEEEEEECCCEE ILLSENQSTYIPLGVTHRLQNPGKIPLELIEVQSGSYLGEDDIVRLDDNYGRDVVAAKGN EEEECCCCEEEEEEEHCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCEEEEECCC >Mature Secondary Structure MNIFPVVLCGGSGTRLWPLSRGGYPKQYLKLAGEHTLVQQTVLRLQGVPGVEAPIMITNA CCEEEEEEECCCCCEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEECC EQRFIVADQLRSIDVTASAVVLEPVGRNTAPAVAAAALLAMEQSPDALLLVLPSDHVILS CCEEEEEHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEH DAIFAKLADTARDIANDGHLVTFGIEPTKPHTGYGYIRSGNALASRDDAFRVDAFVEKPD HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCC AETAARFVSEGGYYWNSGMFMLKASVYLDELKRFEPAVLEQVTLSVKQAKRDEDFVRLDA HHHHHHHHHCCCEEEECCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECH DAFQECPNISIDYAVMEKTDHAVMVAAAGLNWSDIGSWAALADISDTDDTGNTLSGDVLT HHHHHCCCCEEEEEEEECCCCEEEEEEECCCHHHCCCEEEEEECCCCCCCCCEEECCEEE DDVSDSYIRADHRMVTAIGVKDLIIVETADAVLVTHRDQSERVKKIVERLSASGRHESVT CCCCCCCEECCCEEEEEECCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHCCCCCCCHH HRKVIRPWGSYESIDQGERFQVKRIIVNPGSSLSLQMHHHRAEHWVVVRGTARVFNGDQV HHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEEEEEECCCEE ILLSENQSTYIPLGVTHRLQNPGKIPLELIEVQSGSYLGEDDIVRLDDNYGRDVVAAKGN EEEECCCCEEEEEEEHCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1370280; 11589581 [H]